RNA id: XM_043247464.1


Basic Information

Item Value
RNA id XM_043247464.1
length 2258
RNA type mRNA
GC content 0.54
exon number 12
gene id nfic
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10152268 ~ 10231799 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTGCGTGTTGCAGTAAAATTGTTTGGAATACGCGCGCGGCTGAAGCGCGCAGAACGTCTCTGCCTCCGAACCGCAGCGGCGCGAGAGGGAAGAGCGGTGCGCGCGCACTGGCGAACACGGGAGAAAGTCGTTTGCCACTTTGTTTCGCACCACACGAGCTTCACAAACCGAggcaaataacttttttttgtgttgttgttaatTTCACGGATATAACGGATGCCCACGGACATCGGAAACCAGAGTTAGCCTCTCTTGCTCCTTCAAGTACTTTCTTTGGGATGGGCTATTTTCATAACGTCATTTCATTCCTccctctttttcattttctctttctttgattCTTTCTCCCACCATTTCCTAAATGGAACAGATTGCAGCACCCCACGCGTTTTCCTGCCAGCAAAGTTTGGTTTCAAACGTGTACAGAGTTTGCGCGTTCTCTTTTGCCGGGCGTCTCTTGATTTAACGGACTCGAAGTGGAAGTCAGAAGTGGCGGCGGTGGAAGTGTTAATCATGATGAGGCTTACCATGATTAACTGTGAAAAATGATCCACTAACTTGTCGGTGTTTTGCCACATTTCAAGTCACGCGCTCCCCTTTCAACATGATGTATTCTCCTCTCTGTCTAACTCAGGATGAATTCCATCCGTTCATCGAGGCGCTGCTGCCGCACGTGCGTGCCTTCGCCTACACCTGGTTCAACCTACAGGCCCGTAAGCGCAAGTATTTCAAAAAGCACGAGAAGCGGATGACGAAGGACGAAGAACGCGCCGTCAAGGATGAGCTCTTGGGCGAGAAGCCCGAGGTCAAACAGAAGTGGGCGTCTCGCCTCCTCGCCAAGCTCCGCAAGGACATCCGGCCTGAGTGTCGGGAGGACTTTGTGCTGTCCATCACAGGGAAGAAGCCTCCATGTTGCGTCCTCTCGAACCCGGACCAGAAGGGGAAGATGAGGCGCATCGATTGTCTGCGGCAGGCGGATAAAGTTTGGCGCCTGGACCTGGTGATGGTGATTCTGTTCAAGGGCATCCCGCTGGAGAGCACGGACGGGGAGCGTCTGGTCAAAGGCGGCCAGTGCTCCAATCCCATCCTCTGCGTCCAGCCTCATCACATCAGCGTGTCCGTCAAAGAGCTGGACCTCTACCTCGCCTACTTCGTGCAGGAGAGAGaAGCTGAACAGAGCAGTAGTCCTCGCACAGGCATTGGCTCAGATCAGGAGGACAGTCGAGCAGCCACCATGGATGCTCCAGAGTTTCAAGAGAGCTTTGTAACTTCGGGCGTCTTCAGTGTAACAGAACTGGTGCAAGTATCAAGAAcaccGGTGGTGACGGGCACGGGGCCGAACTTCTCTCTCGGAGAGCTGCAGGGTCATCTTGCTTATGATCTGAACCCTTCAGGGGTGGGAATGAGGAGAACCCTTCCCAGCACCTCCTCTAGCGGAAGTAAGAGACACAAGTCAGGATCCATGGAGGATGATATAGACACCAGCCCAGGGGGCGAGTACTACACATCTCCCAACTCCCCTGCCAGCAGTTCACGCAACTGGCAAGAGGAGATGGAAGGAGGAATCTCCCCTACAGTTAAGAAGACAGAGATGGATAGTCCATCTCCTCAGGAGAGCTCTCCACGTCTCGGCTTCACACAGCACCACAGACCTGTCATTGCAGTGCACAGCGGTATCTCTCGGAGTCCACATCCCTCCTCGTCTCTGCATTTCCCTGGCGCTCCCATTCTCCCCCAGACTGCCTCCACCTACTTCCCACACACGGCCATCCGGTACCCCCCTCACCTCAGCTCTCAAGACCCGCTCAAGGATCTTGTCTCTCTGGCCTGTGACCCGTCCAATCAACAGCCCAGCCCGCTGAATGGCAGTGGTCAGGTGAAGGTTTCCAGTCACTACATCTCCTCTCAGATGCTGGCCCCCCCACCACCCCCGGCTGCCCGTCTGACGCTGCCCCCAGAGTCCAAATCCAGCACCACCTCTGCAGACGCAGCTGCCAGCTCACCCACCTCCCCCAcatACTCTGCTCCCGGGACGCCACCTGCCAACCGCTCCTTCGTAGGAATTGGTTCTCGAGACACTGGCAGTCTGTATCAGGCACAGTCCTGGTATCTGGGGAACTGATcatcacacacacgcagacgaACCCGAGGAGGCACAGACATGGATTcgaaaaatcaattttttttgtggaatttacaagaaaaaaagttgtgaACGAGATGCAAGAGGGAAATTCAGATATATATGcagtat

Function

GO: NA

KEGG:

id description
K09170 NFIC; nuclear factor I/C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92824 lncRNA upstream 1631 10149900 ~ 10150637 (+) True G62703
TU92791 lncRNA upstream 3088 10148916 ~ 10149180 (+) True G62690
TU92789 lncRNA upstream 5186 10146867 ~ 10147082 (+) True G62688
TU92787 lncRNA upstream 10384 10141522 ~ 10141884 (+) True G62686
TU92785 lncRNA upstream 13003 10137323 ~ 10139265 (+) True G62684
TU92793 lncRNA downstream 1799 10233598 ~ 10292220 (+) True G62691
TU92818 lncRNA downstream 3381 10235180 ~ 10241127 (+) True G62697
TU92794 lncRNA downstream 30990 10262789 ~ 10292220 (+) False G62691
TU92867 lncRNA downstream 106306 10338105 ~ 10338669 (+) True G62732
TU92868 lncRNA downstream 110154 10341953 ~ 10342203 (+) True G62733
XM_043247465.1 mRNA upstream 20023 10126276 ~ 10132245 (+) True mfsd12b
XM_043247418.1 mRNA upstream 27668 10099845 ~ 10124600 (+) False csnk1g2b
XM_043247417.1 mRNA upstream 27668 10099845 ~ 10124600 (+) True csnk1g2b
XM_043247711.1 mRNA upstream 53633 10096006 ~ 10098635 (+) False zgc:101100
XM_043247712.1 mRNA upstream 53633 10096007 ~ 10098635 (+) True zgc:101100
XM_043247661.1 mRNA downstream 27949 10259748 ~ 10264771 (+) True fzr1a
XM_043246952.1 mRNA downstream 41033 10272832 ~ 10279601 (+) True LOC122350469
XM_043246953.1 mRNA downstream 41352 10273151 ~ 10279601 (+) False LOC122350469
XM_043246942.1 mRNA downstream 70493 10302292 ~ 10313338 (+) True uck2a
XM_043246214.1 mRNA downstream 82839 10314638 ~ 10316153 (+) True magoh
TU92500 other upstream 446629 9704481 ~ 9705639 (+) True G62483
TU91548 other upstream 2623200 7524635 ~ 7529068 (+) False soat1
TU91547 other upstream 2628372 7306119 ~ 7523896 (+) True soat1
TU91367 other upstream 3302557 6848481 ~ 6849711 (+) True G61713
TU92869 other downstream 117160 10348959 ~ 10353113 (+) False col2a1a
TU92796 other downstream 200003 10431802 ~ 10440496 (+) False G62692
TU92799 other downstream 237075 10468874 ~ 10478799 (+) True G62692
XR_006251600.1 other downstream 960925 11192724 ~ 11197803 (+) False LOC122350428
TU93183 other downstream 1063006 11294805 ~ 11311433 (+) True G62940

Expression Profile