Gene
RNA
| Item | Value |
|---|---|
| gene id | G36486 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000005 |
| NCBI id | null |
| chromosome length | 7630583 |
| location | 1430750 ~ 1430975 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU41429 | True | 226 | lncRNA | 0.38 | 1 | 1430750 | 1430975 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000005_01250101_01298320 | MYOM2 | coding | downstream | 132430 | 1248838 ~ 1298320 (-) |
| CI01000005_00700274_00704932 | NA | coding | downstream | 725818 | 699474 ~ 704932 (-) |
| CI01000005_00596581_00598577 | NA | coding | downstream | 832173 | 596167 ~ 598577 (-) |
| CI01000005_00461483_00481276 | NA | coding | downstream | 948966 | 460760 ~ 481784 (-) |
| CI01000005_00358864_00426242 | NA | coding | downstream | 1003753 | 358848 ~ 426997 (-) |
| CI01000005_01648294_01654249 | OIT3 | coding | upstream | 217016 | 1647991 ~ 1654249 (-) |
| CI01000005_01674196_01674495 | NA | coding | upstream | 242464 | 1673439 ~ 1674495 (-) |
| CI01000005_01677318_01687512 | MCU | coding | upstream | 246186 | 1677161 ~ 1687599 (-) |
| CI01000005_01723641_01729676 | NA | coding | upstream | 292363 | 1723338 ~ 1730336 (-) |
| CI01000005_01761513_01769840 | NA | coding | upstream | 330212 | 1761187 ~ 1769851 (-) |
| G36485 | NA | non-coding | downstream | 343 | 1430153 ~ 1430407 (-) |
| G36460 | NA | non-coding | downstream | 55036 | 1371703 ~ 1375714 (-) |
| G36436 | NA | non-coding | downstream | 82101 | 1330295 ~ 1348649 (-) |
| G36412 | NA | non-coding | downstream | 102937 | 1308341 ~ 1327813 (-) |
| G36409 | NA | non-coding | downstream | 206666 | 1223672 ~ 1224084 (-) |
| G36416 | NA | non-coding | upstream | 854 | 1431829 ~ 1433877 (-) |
| G36494 | NA | non-coding | upstream | 11812 | 1442787 ~ 1502949 (-) |
| G36567 | NA | non-coding | upstream | 115095 | 1546070 ~ 1546923 (-) |
| G36536 | NA | non-coding | upstream | 182156 | 1613131 ~ 1616304 (-) |
| G36614 | NA | non-coding | upstream | 186164 | 1617139 ~ 1617635 (-) |
| G36049 | NA | other | downstream | 387078 | 1021295 ~ 1043672 (-) |
| G36628 | NA | other | upstream | 232292 | 1663267 ~ 1664279 (-) |
| CI01000005_01883894_01899867 | NA | other | upstream | 452279 | 1883222 ~ 1899867 (-) |
| G38510 | NA | other | upstream | 2773870 | 4204845 ~ 4206208 (-) |
| G38415 | NA | other | upstream | 2950263 | 4381238 ~ 4401110 (-) |
| G39515 | NA | other | upstream | 4402817 | 5833792 ~ 5834539 (-) |
