G36416


Basic Information

Item Value
gene id G36416
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 1431829 ~ 1433877 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU41357
GACTTGGAACAACACACAGCATATAAACACTTCCACATTGCAAAATAAATACTGTACACGGCTGGTTCGTCGATCAAACAGTCCTTCAGTTCATATTACACACATACTTTTAACAAGTCTCAGATATTAAGTGTCTATTCTAAGGCTCTCAGACAGTGTCGCCTTTGACAGCTATTGTTTTCTGGCACAAAGGAAGGACCGTGGCCTCTGGATGCATTTCACTGGTCGTCATTCGCTTCATTTTTTCCCATTAATTGTCCACATTATTTCCACAGTTTAAATCAAGCATCTGACATTCAGCCCATCAAAGTGAAAACAATAGCAATGTGCAAAAAACTGTTTTCCAGTCAATGTGTAAAGGTAACCTGCAAAAATTCTCTGAGTGATCAGCAATACTGTACATTTCAATGCAGAAAACATTCCCGTCTGTCCATTAAGAAAGCTGAGTGTGTGTAGGACGCGTTCTTGCGTTCATTCTGCGCTGTTTATTGTTGCTTTATGTGCACTGCGTCATATGGACGTTTTTGCGCAATCACGTTTAAGCGGCGTGTCAAGTTGAAAACACTTAAAAAGGCCTATGCATTCTGTTCCATTCCAATAATTTGAAGGAGCGTATATGAACCCAAGTACGTGTCCTGCGTGAACGAAACGTTCACGTGACGCCTTCGTGCTTTACATGTTCTCTATTTTATTTTTTGGTCTATGTAAACATTGCAACGCATTTGATTTTTTTTTTCTTCTTCAGCGTCTTCCATATGTGCCAAGTTTTAAGACGCCCAGGGCCCAGTCACGTTAAAAAATAGTCCATTGTTGCGCTTTTTCAGCAAGAACGCGCCCTGTGTGCGCGCCTTCCTTCGTTCTGTCTGCGCTTTTTTTAATCGTTGCTCTATGTACACATGCGTCACGGTCATGAGCCTTGCGTTTGAAGATGGTGTGTCCAATTAATAATACTTCAACTTTTACAAACGCGTCTCTTCAATACCATTGCGCTCTGTCCTGCTGTTTCTCAACGCGAGAACGCGTCCTGTGTGAATGACCCTTAGAGGACATTATTTCTAAAAGCAAATTAGGTGACTTTTGTGTTTGACACAACTCATGGAATGAAGTCTTCACAGTGGACCTTCCTTTTGTGGAATGAAGTAGCTGAGGTCATCAACTTTTAAGATGAGGCAACGATGACAGTTTATCAACTTTCCCAAAAGCAGCAGCACTTTCCACACCTTTGAGCCACTCTTTACATTTCCTCATGACAGTCTCGTCCACGTCTCCATCCTCCTCCTCATACTCAACATCATCATATTTGTACTGATCATTGAGGAGGGAGATCTTCACAATGGTGCTAATGTCATTGGAACTGTCCAGTTTGGCAACAGGTCCGGAGCTCTTATTGTTAGAGCTGCCCTGAGCTCTCTTGGATGGGAAAACCCGCCGGTGTCTTAAGTCCGCGGAAGCGCAGCACTTCTGTTGCTTGGCCATCATCTGCTTTTCCAGATTGCGCTTTTGGATGACCAGGATGGCTTCGGGGGTCAGGCTGAGGGAGAAGTGGATCTCTTGCTCGCCTTCTTCTTTTGCTAGAGAGGTCCTGGAGGCATATTTATGGCTGGATTCTCCAGAACTGGACCGTGGGACGCTTTCGCATGAGGTAGCAAAGGGTTTGGGGACGCTCAACCATGAATGTTTGCTGTCCGTCTCGGGATCTGGAGGGACTCTGGTCGGCTTACTTCGTCCCAGCTGCTTTAAATTGGCCGATGGCCACGATGTAGATATTTTGTCTTTCTCCGATTCCTTGTCGTCTCCTGTCCTTTGACTGTACGTGGGTTGAGGAGGTGCGACAGTGTCCCTGCTCTTCTTTTTCCTGAACAGCTCCTTTCTTGGCGATGATATCCGTGAGTGCAGGTTTATCGGCGGAAAAGGCATTTTGAACGCAACCGATGCGCAAAACAATCAAGAAATCTGTGCGTGAATGATAGAAGAAATACGTCCATTCGCCTCGGTCCACCGGATCTTTGGGTATTAGACGCAGTAGTCCACTCCACACTCCACATTCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41357 True 2049 lncRNA 0.39 1 1431829 1433877

Neighbor

gene id symbol gene type direction distance location
CI01000005_01250101_01298320 MYOM2 coding downstream 133509 1248838 ~ 1298320 (-)
CI01000005_00700274_00704932 NA coding downstream 726897 699474 ~ 704932 (-)
CI01000005_00596581_00598577 NA coding downstream 833252 596167 ~ 598577 (-)
CI01000005_00461483_00481276 NA coding downstream 950045 460760 ~ 481784 (-)
CI01000005_00358864_00426242 NA coding downstream 1004832 358848 ~ 426997 (-)
CI01000005_01648294_01654249 OIT3 coding upstream 214114 1647991 ~ 1654249 (-)
CI01000005_01674196_01674495 NA coding upstream 239562 1673439 ~ 1674495 (-)
CI01000005_01677318_01687512 MCU coding upstream 243284 1677161 ~ 1687599 (-)
CI01000005_01723641_01729676 NA coding upstream 289461 1723338 ~ 1730336 (-)
CI01000005_01761513_01769840 NA coding upstream 327310 1761187 ~ 1769851 (-)
G36486 NA non-coding downstream 854 1430750 ~ 1430975 (-)
G36485 NA non-coding downstream 1422 1430153 ~ 1430407 (-)
G36460 NA non-coding downstream 56115 1371703 ~ 1375714 (-)
G36436 NA non-coding downstream 83180 1330295 ~ 1348649 (-)
G36412 NA non-coding downstream 104016 1308341 ~ 1327813 (-)
G36494 NA non-coding upstream 8910 1442787 ~ 1502949 (-)
G36567 NA non-coding upstream 112193 1546070 ~ 1546923 (-)
G36536 NA non-coding upstream 179254 1613131 ~ 1616304 (-)
G36614 NA non-coding upstream 183262 1617139 ~ 1617635 (-)
G36619 NA non-coding upstream 205822 1639699 ~ 1639918 (-)
G36049 NA other downstream 388157 1021295 ~ 1043672 (-)
G36628 NA other upstream 229390 1663267 ~ 1664279 (-)
CI01000005_01883894_01899867 NA other upstream 449377 1883222 ~ 1899867 (-)
G38510 NA other upstream 2770968 4204845 ~ 4206208 (-)
G38415 NA other upstream 2947361 4381238 ~ 4401110 (-)
G39515 NA other upstream 4399915 5833792 ~ 5834539 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005740 prr18 coding NC_007124.7 CM002897.2 4405282 ~ 4407074 (+)