CI01000006_06955035_06961818 (PPM1NB, PPM1N)


Basic Information

Item Value
gene id CI01000006_06955035_06961818
gene name PPM1NB, PPM1N
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6955035 ~ 6962205 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_06955035_06961818.mRNA
ATGAGGACATCCAGGAAAGGAAGCGTGGAAATGCCTGCTTTTGTAAGGCAGCTGGTGAAGGAAACCGAGAAAAGGGTCACCTCCTTTTTTAAAGGGGGGCGAGGGGGAGGTGCAGGGGAGCTGTCCGAAGGTGAAGAGGGAGGAGAGGAGGAAGGGGTCATCCCTAGCCCCTACTTAGATCGACCGGTTCTGGACAAGCACATGCAAGAGGGCTGTGCTTCCTGGGGACTTACCTACGCCCTGGCCAGCATGCAGGGTTGGAGGGCCCACATGGAGGATTTCCACAACTGCTTCCCTCAGCTAGGAGGGGAACTGTCCCATTGGGGGTTCTTCGCAGTGTTTGATGGACACGCAGGAAGCGCGGTGGCCCAACACTGCTCCCGAAACCTGCTGGACCACATCCTAGGCACAGGCAAGATCCGAGCAGATGCGGATGTTGAAAGGGTCACTGAAGGCATCAAGGAGGGCTTTTTTCTCATGGACAAGCACCTTCATGCCATGGCTTGCCGTGAGGGTTGGGAACGCGGAGGGACCACTGTCGTTTCCACTGCTATCACCCCGCACCACATCTACTTTGTGAACTGCGGGGACTCTCGGGCCGTCTTGTGCCGTGCGGGGCGGGTGGCCTTCTCGACAGAGGACCATAAGCCCTTCAGCCCTGGTGAGAGGGAGAGGATAGAGAGCGCTGGAGGATCTGTGACTTTGCAGCGCGTGAATGGCTCGCTGGCAGTCTCTCGGGCGTTGGGGGACTTCAGTTACAAGACAGCCGAGTGGCGGCCGGTCACAGAACAGATGGTCTCGCCCGAGCCGGAAGTGTCTGCTGTGGAGCGCTCGCCAGCAGATGAGTTTCTGGTTTTGGCCTGCGATGGTGTGTGGGACACTGTCAGTAATGAAGAGCTCTGTGCCTTCATACACAGCCGACTGCGTGTCTGCACAGATTTGAGAGAGGTCTGCTCCCAGGTCATCGACCTCTGCCTCTATAAGGGGAGTCTTGATAACATCAGCATCATCCTAGTCTGTTTCCCTGGCGCCCCCCAGCTGTCACCTGAAGCACTGCACCAGGAGGCTGAGCTGGAGGACTTTCTGGAGTCCAAAGTAGCTGAGATATTTGAAGAGCTGAGTGCAAGAGGTGATGAGCCTGATTTGCTATCAGTTCTGACAGTACTGGCTTCAACAGTGATACCTGGACTACCACCAGGGGGCGGCCTACAGAGCAAGCGGAACTGTATAATTTCTGCCTACTATCAGCAGAAAGAGGCACGGCGATCAAGATTATCCCAGGAACTCAGTCCTACAGGTGCCAATTAGAGTCCATCTTTTATAAATGCTTAATGGATGTGATAGATTGAGGAAGAAGTAAAGGTTATCAGTTGTCTGTCTTTTAAACTCGTAAGAAATGGAAAGGATCTTCTTTTTGGACAGCAACAAAAATTTTACTTCCTTCTTTTTGTATGTTTCCTAAATGACGAAACTTATAAAAAGCAACGCTGTGCCACAATGCAGGACAATAATGACTGTATATAACTTTGACTCTTTAGATTGTTATACCTTCAGTATTTTCCTTACCAAATGTATTCGAGTCTTACAATCGACAATACTCAGGTAATGTGTTCAAGCAGTGATGACAAATTTTTGAGATTCTCTACAGTCTTTGCATTCTAACAGGTCGATTTTTAAACCTATATTAACAGAATA

Function

symbol description
ppm1nb Predicted to enable magnesium ion binding activity; manganese ion binding activity; and phosphoprotein phosphatase activity. Predicted to be involved in negative regulation of I-kappaB kinase/NF-kappaB signaling and positive regulation of canonical Wnt signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be active in cytosol and nucleus. Orthologous to human PPM1N (protein phosphatase, Mg2+/Mn2+ dependent 1N (putative)).
ppm1n Predicted to enable metal ion binding activity and protein serine/threonine phosphatase activity. Predicted to be involved in negative regulation of I-kappaB kinase/NF-kappaB signaling and positive regulation of canonical Wnt signaling pathway. Predicted to be active in cytosol and nucleus.

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K04457 PPM1A, PP2CA; protein phosphatase 1A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_06955035_06961818.mRNA True 1695 mRNA 0.51 6 6955035 6962205

Neighbor

gene id symbol gene type direction distance location
CI01000006_06898410_06913888 NECTIN3, PVRL3B coding upstream 41089 6898410 ~ 6913946 (+)
CI01000006_06853100_06858970 OR133-7 coding upstream 95602 6852831 ~ 6859433 (+)
CI01000006_06847369_06848340 OR133-1 coding upstream 106324 6846954 ~ 6848711 (+)
CI01000006_06838948_06839904 NA coding upstream 114781 6838775 ~ 6840254 (+)
CI01000006_06825096_06826055 OR133-1 coding upstream 128583 6824949 ~ 6826452 (+)
CI01000006_06987083_06990215 NA coding downstream 24878 6987083 ~ 6990358 (+)
CI01000006_07066344_07070484 FTSJ1 coding downstream 104139 7066344 ~ 7071255 (+)
CI01000006_07072315_07073358 NA coding downstream 109463 7071668 ~ 7073411 (+)
CI01000006_07078406_07080719 NA coding downstream 114747 7076952 ~ 7080930 (+)
CI01000006_07121418_07160572 ANK1 coding downstream 158964 7121169 ~ 7160825 (+)
G44210 NA non-coding upstream 105878 6848942 ~ 6849157 (+)
G44196 NA non-coding upstream 121765 6833001 ~ 6833270 (+)
G44180 NA non-coding upstream 187096 6767432 ~ 6767939 (+)
G44173 NA non-coding upstream 241564 6712699 ~ 6713471 (+)
G44755 NA non-coding downstream 8299 6970504 ~ 6970816 (+)
G44747 NA non-coding downstream 14193 6976398 ~ 6976884 (+)
G44780 NA non-coding downstream 30663 6992868 ~ 6995377 (+)
G44817 NA non-coding downstream 101316 7063521 ~ 7063784 (+)
G44818 NA non-coding downstream 101622 7063827 ~ 7064167 (+)
CI01000006_06122278_06122736 NA other upstream 826360 6122035 ~ 6122751 (+)
CI01000006_06104927_06109730 NA other upstream 845447 6104927 ~ 6109820 (+)
G43896 NA other upstream 1183260 5770089 ~ 5771775 (+)
G41996 NA other upstream 1830886 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 3219057 3734554 ~ 3736035 (+)
CI01000006_07167131_07168925 NA other downstream 204584 7166778 ~ 7168925 (+)
G44872 NA other downstream 394147 7356352 ~ 7387884 (+)
G45178 NA other downstream 659786 7607604 ~ 7683671 (+)
G45265 NA other downstream 921662 7883867 ~ 7920355 (+)
G45336 NA other downstream 1057137 8019342 ~ 8021951 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019537 ppm1nb coding NC_007132.7 CM002905.2 21367914 ~ 21373242 (-)