CI01000006_06898410_06913888 (NECTIN3, PVRL3B)


Basic Information

Item Value
gene id CI01000006_06898410_06913888
gene name NECTIN3, PVRL3B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6898410 ~ 6913946 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_06898410_06913888.mRNA
GGGTAGTGTATGGCAGTCAGGTGGTTGTCCCCCCTAAGGTGAATGCTGTGTTGGGAAAGAACGTCACCCTCAGCTGCAGGGTGCAGGTGGACACGAACCTCAGCCTGACACAGAGCTCCTGGGAGAGGAAGCTGCCCACTGGATGGGTGACTCTGGCCGTGTACAACCCCATGTTCGGCATCTCCATCCCGCCTGAATATGAGCGACGCCTGTCCTTCCGCTCGCCCTCTATGCATGACGCCACCATCGTGCTGGAAGATGTGGGTTTCGCTGACATCGGCTTGTACACCTGCAAGGTTGCCACCTTTCCGCTGGGTAACACACAGGCCTCCACCACCGTCAGCGTGCTAGTGGAGCCGAAGGTGTATGTCTCGGCCGGATCTTCCGCTCTGATCGACGGTGGCAATGAAACCACGGTGGCCACCTGCATCGCCGAGAGGGCGCGGCCCCCTGCTGAAGTCTCCTGGGAGACGAATCTGTATGGCACGTCTGAGGCCCACATGCAGGACGATGCCAACGGCACCACTACGACCCAAGTGCACTACACCTGGCAGCCCTCCCGTCACTCCCAAGGACACACGCTAACATGTGTGGTGAAACATCCCGCTCTGCAGAGTGACTTCAGGATACCCTATATTGTCAACGTACAGTTTGCTCCAGACATCCTGGTGCTGGGCTATGACGGCGACTGGTATGTGGGCAGGGAGAATGTACAACTGAAGTGTCGAGCCAAGGCCAACCCGCCTGCCCAGCACTTCAGATGGATCAGGTTGGATGGCGAGATGCCGGATGGAGCAGAGGTGGTGAATAACTCTTTGGCGTTTATGCGGCCCCTGCAGAAGAACGACTCTGGTGTTTACAGGTGTGAGGTGGCAAACGACATCGGGCTGCGAAGTCGAGACATTAGAATACGCATTCAGGATCCTCCCTCAACCACCACCATGCCCCCCACCACACCTGTGCGCCTCCTAACCGCCGACATCTCTGCCACCGCACCTGGCAATAAACAGCGAGCCCTCATCACCTCTCCGACCCTGGCGCCTCTTCCAGAGGGAAGCCTAGGCACAATTGTGGGTGGGGCAGTGGGCGGAGCCCTCTTCCTGCTGTTGCTGCTCATTCTAGGCGGAGTTTATTACCAGCGTCAGCGGCGGACGTTCCGCGGTGACTACTACACAAAGCAGTATCACGGCCCCTCGGACATGCAGAAGGCTCCCCAACCCCATGAGTTGCAGCAAGTCTACAGCAAAGGAAGCCCTGACACCAAGCTCAAATCCAACCAGGATAACGGCTCCATCTACCCGGATAAGGATCGAGAAGAGTGGGGTGATTTCGACCGAGAGCGATCACCCAACGGTCGCAGCAGAGCTCTGAGGGAAGCAGGCGGTCAACTCAACCACCATAACCATCACAACCATGAGCACAGCTACCACAACAACCATCACCCCGGCCATCCGCAGACCTTTAGTCCAGCCCATCACATCCAGAGGAGCTCGCTGCAGCCGGAGCCCCGCAGGTACGCCGCTCCGCAAGTCATGAGCAACGGCTCGCCCTACATGCCAGAGAACTGCTACGACAATGACTACGTGTCGCACACTGATGGCTCAATGATCTCCCGGAGGGAGTGTTGGCCTCAGATCCATTTCGTGTTGGTTGGAGGGGTGACTGTTGAGGTCTTGGGCGTGACTGGTTGCTTCAGCTGCAGAAATGTTCCCTGTGGGGGTCTCCTCTACTCTCCTGGAGGCCTCCAGGGATGTATTCCTCACGCCCTCTTTTCCTTTGCTGTGGTTAACCTACTTCATCTCCGAATATCCCCTCTTGCTCTGAGCCTCATGCATATTTTGTGGGAAAGCCTGTGGCTAAAAGCTTCCTGTGGATGGGGGCTGAACTTCCTCTCAGACTTACCTAGGATAGCCTTAAAGTGTGGGGGGATTATGGACTTGTTGATTCTTGTGTTTGCACTGCTGTTCTGTCGATCTGTGTGAGAGGAGATTGGGGGGGGGGAGCTGGTTGAAGAAGGGAAGATCAAGCGCAGCAGTGGGA

Function

symbol description
nectin3 Enables cell adhesion molecule binding activity and identical protein binding activity. Predicted to be involved in establishment of protein localization to plasma membrane; heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules; and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to act upstream of or within several processes, including camera-type eye morphogenesis; fertilization; and protein localization to cell junction. Predicted to be located in cell-cell junction and plasma membrane. Predicted to be active in adherens junction; apical junction complex; and hippocampal mossy fiber to CA3 synapse. Predicted to be integral component of postsynaptic density membrane.

GO:

id name namespace
GO:0008037 cell recognition biological_process

KEGG:

id description
K06592 PVRL3, CD113; poliovirus receptor-related protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_06898410_06913888.mRNA True 2040 mRNA 0.57 6 6898410 6913946

Neighbor

gene id symbol gene type direction distance location
CI01000006_06853100_06858970 OR133-7 coding upstream 38977 6852831 ~ 6859433 (+)
CI01000006_06847369_06848340 OR133-1 coding upstream 49699 6846954 ~ 6848711 (+)
CI01000006_06838948_06839904 NA coding upstream 58156 6838775 ~ 6840254 (+)
CI01000006_06825096_06826055 OR133-1 coding upstream 71958 6824949 ~ 6826452 (+)
CI01000006_06803516_06806038 NA coding upstream 92196 6803026 ~ 6806214 (+)
CI01000006_06955035_06961818 PPM1NB, PPM1N coding downstream 41089 6955035 ~ 6962205 (+)
CI01000006_06987083_06990215 NA coding downstream 73137 6987083 ~ 6990358 (+)
CI01000006_07066344_07070484 FTSJ1 coding downstream 152398 7066344 ~ 7071255 (+)
CI01000006_07072315_07073358 NA coding downstream 157722 7071668 ~ 7073411 (+)
CI01000006_07078406_07080719 NA coding downstream 163006 7076952 ~ 7080930 (+)
G44210 NA non-coding upstream 49253 6848942 ~ 6849157 (+)
G44196 NA non-coding upstream 65140 6833001 ~ 6833270 (+)
G44180 NA non-coding upstream 130471 6767432 ~ 6767939 (+)
G44173 NA non-coding upstream 184939 6712699 ~ 6713471 (+)
G44745 NA non-coding downstream 31709 6945655 ~ 6963524 (+)
G44755 NA non-coding downstream 56558 6970504 ~ 6970816 (+)
G44747 NA non-coding downstream 62452 6976398 ~ 6976884 (+)
G44780 NA non-coding downstream 78922 6992868 ~ 6995377 (+)
G44817 NA non-coding downstream 149575 7063521 ~ 7063784 (+)
CI01000006_06122278_06122736 NA other upstream 769735 6122035 ~ 6122751 (+)
CI01000006_06104927_06109730 NA other upstream 788822 6104927 ~ 6109820 (+)
G43896 NA other upstream 1126635 5770089 ~ 5771775 (+)
G41996 NA other upstream 1774261 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 3162432 3734554 ~ 3736035 (+)
CI01000006_07167131_07168925 NA other downstream 252843 7166778 ~ 7168925 (+)
G44872 NA other downstream 442406 7356352 ~ 7387884 (+)
G45178 NA other downstream 708045 7607604 ~ 7683671 (+)
G45265 NA other downstream 969921 7883867 ~ 7920355 (+)
G45336 NA other downstream 1105396 8019342 ~ 8021951 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019539 nectin3b coding NC_007132.7 CM002905.2 21448996 ~ 21515466 (-)