CI01000006_06847369_06848340 (OR133-1)


Basic Information

Item Value
gene id CI01000006_06847369_06848340
gene name OR133-1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6846954 ~ 6848711 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_06847369_06848340.mRNA
TTATAAATTCAAGAATTAAAGACATTTCCACAAAAACTCACAAGGAAACATAAACCACTGGGATTTGCTATACTTGATGCTGTTATTCAGGCACTTATTGCGGGAAAACACACCAAGGGTTACTTTTTTTTTTCCACAGTCATTTTGACACACACAAACCAGCCACTGGGATTCCATACGTAGTTCATGACAGATGCTTTACAGATATTTAAAGTGTGATACTCTCTGATCATTCTCTGTACCTTCAACAACAGAGGTGACACAAGCCTGGAGATTTGCAGTTACAAAGACTTTCTAGATCGCCATATTATTCAGTGTTTATAACAGCATTTTTTGTCTTTTTTATTGAATATGTCTAATTTTAATGATTCTAAATCTAACATCACTCAGACTATATCACCAGTGGATCGAGATTTGAAAACATTTTTGTCTGTGTCCTCATGTGTTATTTTCCTGTATGTCAATGGAGTCATGATCTTCACTTTGAGGAAAAAGACAATTTTTCAGGAGGCATCTCGCTACATTTTGTTTGGTCACATGCTTTGGGTCGATACGCTCAATCTTGTTATGAGTGTACTGTTGTTTGTGTTGGCTGTTTGTAGGCTTTTTGTTATGAAAATTTTCTGCCTTATCCTTCTTGTTGCTGCAACAGCTCTCTATCAGGTCTCTATATTAAATCTGGCTTTGATGTCACTGGAGAGGTATGTGGCCATCTGCATCCCTCTCAGACATGCAGAAATCACCACCTACGGAAGAACTAACATGGCCATTGGTGTTGTTTGGATGTTAAGCTGGATTAAATCCCTGTCTCAGATTATTATATTTTGTTCCATGGATACAAACACAGCAATGCATTTGTTCTGCTCAAAAACTACTCTCTTCAGGCTACAGGTCTATAAGCAACTTGATATAGGTTTCACTTGTGTATTTTTTGTATCTGTGTGTTTTGTTATTATCTTTTCTTATGCTTCTATAGCAGCTGTGGCTAAAACAGCCTCCTGTGATAAAATGTCAGCCAAAAAAGCCAACAAGACTGTTCTGTTGCATCTAATACAGCTGGGTCTCTGTGCTGCATCCATTTTAGTTGGAGTTATTCAAGAAGTCATTTATGTTTATACTGACTATATGACATCATTACATGTAATGTATTTTTGCTTTGTAACGTTTATGATTTTCCCTAAATGTCTAAGTCCACTTATATATGGTCTGAGAGACCAGGCTTTCAGCTGTTTATTTAAATACTACTTTACATTTGGTCTCAAAAAGCAAAATAGTTGTAATACAGAGATGCATTTAGGGAGAGAAAAAATAGATACTACATAACTGATGGTATTTAAATGTTATCTAAAAGGCTTAAGTTGATAATGGTCTTTTATTATTAAGATACAAAAATATATTTCTCTACAATTTTAAAATATGAATTTGTGTCTGACGATGAGATATTGGAGATGAACCACACAAAAATGACTGACTTGTGGAAAATCATTCAAGCATATATTTAACAATCACACTAAACCACACTTGTCACAATGTTTTCCAGTGCAGTAACCACAGATATGGGATGTAAAATGTTTGTTGTCCATTTAATCTTATACATTATGACAACTGCTTTTATCACACTGTCAATGAATTCACAGTAGCTGAAATGAGACTTTAAGCCTCCAAACTTTCTGTAAATCTATGAAATCAGACTA
>TU50203
GTTTTGCCTTACTGTGTTTTTAAAAATAGGTAGTACAGAGTCTGAGGTAAATGCACAGACTGTCTTATAAATTCAAGAATTAAAGACATTTCCACAAAAACTCACAAGGAAACATAAACCACTGGGATTTGCTATACTTGATGCTGTTATTCAGGCACTTATTGCGGGAAAACACACCAAGGGTTACTTTTTTTTTTCCACAGTCATTTTGAC

Function

NR:

description
odorant receptor

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_06847369_06848340.mRNA False 1694 mRNA 0.35 1 6847018 6848711
TU50203 True 213 lncRNA 0.40 1 6846954 6847166

Neighbor

gene id symbol gene type direction distance location
CI01000006_06838948_06839904 NA coding upstream 6764 6838775 ~ 6840254 (+)
CI01000006_06825096_06826055 OR133-1 coding upstream 20566 6824949 ~ 6826452 (+)
CI01000006_06803516_06806038 NA coding upstream 40804 6803026 ~ 6806214 (+)
CI01000006_06800620_06801564 NA coding upstream 45396 6800360 ~ 6801622 (+)
CI01000006_06790435_06791964 NA coding upstream 54213 6790110 ~ 6792805 (+)
CI01000006_06853100_06858970 OR133-7 coding downstream 4120 6852831 ~ 6859433 (+)
CI01000006_06898410_06913888 NECTIN3, PVRL3B coding downstream 49699 6898410 ~ 6913946 (+)
CI01000006_06955035_06961818 PPM1NB, PPM1N coding downstream 106324 6955035 ~ 6962205 (+)
CI01000006_06987083_06990215 NA coding downstream 138372 6987083 ~ 6990358 (+)
CI01000006_07066344_07070484 FTSJ1 coding downstream 217633 7066344 ~ 7071255 (+)
G44196 NA non-coding upstream 13748 6833001 ~ 6833270 (+)
G44180 NA non-coding upstream 79079 6767432 ~ 6767939 (+)
G44173 NA non-coding upstream 133547 6712699 ~ 6713471 (+)
G44164 NA non-coding upstream 158453 6688327 ~ 6688565 (+)
G44162 NA non-coding upstream 159441 6687319 ~ 6687577 (+)
G44210 NA non-coding downstream 231 6848942 ~ 6849157 (+)
G44745 NA non-coding downstream 96944 6945655 ~ 6963524 (+)
G44755 NA non-coding downstream 121793 6970504 ~ 6970816 (+)
G44747 NA non-coding downstream 127687 6976398 ~ 6976884 (+)
G44780 NA non-coding downstream 144157 6992868 ~ 6995377 (+)
CI01000006_06122278_06122736 NA other upstream 718343 6122035 ~ 6122751 (+)
CI01000006_06104927_06109730 NA other upstream 737430 6104927 ~ 6109820 (+)
G43896 NA other upstream 1075243 5770089 ~ 5771775 (+)
G41996 NA other upstream 1722869 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 3111040 3734554 ~ 3736035 (+)
CI01000006_07167131_07168925 NA other downstream 318078 7166778 ~ 7168925 (+)
G44872 NA other downstream 507641 7356352 ~ 7387884 (+)
G45178 NA other downstream 773280 7607604 ~ 7683671 (+)
G45265 NA other downstream 1035156 7883867 ~ 7920355 (+)
G45336 NA other downstream 1170631 8019342 ~ 8021951 (+)

Expression


Co-expression Network