CI01000006_06790435_06791964


Basic Information

Item Value
gene id CI01000006_06790435_06791964
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6790110 ~ 6792805 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_06790435_06791964.mRNA
CTTTAAAAGCCAGCTACAGCTAGTCCCCGAAAAACAACGCCAGAAAGTTTTGCTGAAAGTAACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCAAGGCAGCAAGCATCGAACCGTCACTTTTGCTTTCAGGTTGTTATCATTTACTTAAATTATTTGTTGTGCATGTGCTTCGTGGTAAGGTAAGCATTGTGATTTAAGCAATGACTGCTTGTAATTTAATCCAAGACTTAAATTTAATAATGGACAAAACACAACCAGGAAGCAAATCAAGGCCCTTTCCAGTAACAACACTATTCAAACAGGAGCATCAAAACTCTGAAAGAAAGCAGCTGACATACAGAATTCCAGCTCTCTTCTATAATAGTGACAATCAAACCTTCCTTGCTTTTGCTGAAAAGCGGAAAACTGCAGACGACACAGATGCAGATGTCCTTGTGATGAGAAAAGGAATATGGAAGGATGGAAGAGTTGAGTGGAATGATGGTCATGAGTTGCTCACTTCAGCTTGTCAACCAAACCACCGCAGCATGAATCCATGTCCGGTCTATGAGAGAGATTCCAAGACCCTCTTTCTGTTTTTCATCACTGTTCCCGTTGGGGTCTCTGAACACAAACAAATACATAAAAATAAGAATCAGGCACGACTTTGTTATATAACCAGTAAGGACACTGGCAAAACCTGGAGACATATTACAGACTTGACAGCAGATGTGATCGGTGAGCAGGTGAAGGACTGGGCCACCTTTGCTGTTGGACCAAGACATGGTGTTCAAATGAAGAGCGGGAGACTGATTATCCCGGCCTATGTGTATCCTTGCCACTCACTCAACTGTAAGCCCACATCACGTGAATTTGCATTCTACAGTGATGATAAAGGAAGCACTTGGCATGCAGGAAAACGTATGGATGGTGAGTCTTGTGAGTGTCAGATGGCTGAGATCATAGACGACAAAGGTAACAGCACACTGTACTGCAATGCTCGAAGTACATCTGGCTACAGAGTCGAGGCTCTAAGTGAGAGTAACGGAGAAGCTTTTGAAAAGCCTTCATCTGCACGTAAGCTGATAGAGACCGGACATGGCTGCCAAGGAAGTGTGTTTAGTTTTGCCCCGATCAAGCACCTGAAAAAACATGGCTACTCTATTGCCATCCAACCAATCCAAGCAAGAGAACGTGCCTTGGTGTCTACTTGAATAAAACCCCGTGGGATGCCTCTGAATGGGAGGATTGTAAATTAATCATCCATGATGGTCCAAGTGGATACTCTGATCTGGCTCAGTGTGGGGATGGAAAACACTTTGCCTGTCTCATGGAATGTGGAGAGATAAGTGAGTTTGAAGGGATAGCCTTTGTCCTTTTTAAACTCTGTGACATTATTTAGGCCAAGGGCGCTGAATGAGACAGCAAAGAAAGCAAAAAAGTAATTTTCTTTTAGTTTGCAAATTATTAAATTACTGCTAAAAAAGCTTAGTAGTTTTTTAGAATATTAAGCAGCACAACTGTTTTCAACATTGCTAATAATAATAAATGTGACACTTAAGACTGCTGTGGCTGATGAAAAATCAGCTTTGCCTTCACAGGAATAAATGATATGTTAAAATATATTAAAATGGAGAACAGTTATAATTATAATAAATGATCACAATATTACTGTTTTTACTGTATTTTTTATCAAATAAATGCTGTTTTGGTGATCATAAGAGACTTACCAACCCCAACAGTAGTGGTCATCAAAATACTTTCTGATGTATTGTCATCTAGCCAAAAATATCCAGAAATAATAATGCAAAGCAGTTTTGTGTCATTATTCCATTTTGTTGTTATTTTCAGTTTTTTTCTTTTGCAAAACTACTTAGCCAGCTTCTTTCCTCACTACCATGACAGTTCTTCTTCCAACCCTCTATCACCTCATCTTATGCTTTATTTATTTTTAGTTGTTACACATTTATTTTAAGTAGTCCTTTATTAGTGCTTGAGTTGAGTCTCAAACCTCTATCTTGGACAGCATGACAAATCTGTTTGCAAACTTGTGAA

Function

NR:

description
Sialidase 3.2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_06790435_06791964.mRNA True 2159 mRNA 0.37 3 6790110 6792805

Neighbor

gene id symbol gene type direction distance location
CI01000006_06658495_06666257 CHRDL2 coding upstream 123612 6658495 ~ 6666498 (+)
CI01000006_06653186_06657164 NA coding upstream 132834 6653186 ~ 6657276 (+)
CI01000006_06598608_06603726 WDR73 coding upstream 186280 6598548 ~ 6603830 (+)
CI01000006_06438579_06447777 ELMOD1 coding upstream 340949 6438579 ~ 6449161 (+)
CI01000006_06432698_06437087 SLC35F2 coding upstream 352518 6432096 ~ 6437592 (+)
CI01000006_06800620_06801564 NA coding downstream 7555 6800360 ~ 6801622 (+)
CI01000006_06803516_06806038 NA coding downstream 10221 6803026 ~ 6806214 (+)
CI01000006_06825096_06826055 OR133-1 coding downstream 32144 6824949 ~ 6826452 (+)
CI01000006_06838948_06839904 NA coding downstream 45970 6838775 ~ 6840254 (+)
CI01000006_06847369_06848340 OR133-1 coding downstream 54213 6846954 ~ 6848711 (+)
G44180 NA non-coding upstream 22171 6767432 ~ 6767939 (+)
G44173 NA non-coding upstream 76639 6712699 ~ 6713471 (+)
G44164 NA non-coding upstream 101545 6688327 ~ 6688565 (+)
G44162 NA non-coding upstream 102533 6687319 ~ 6687577 (+)
G44136 NA non-coding upstream 139999 6647874 ~ 6650111 (+)
G44196 NA non-coding downstream 40196 6833001 ~ 6833270 (+)
G44210 NA non-coding downstream 56137 6848942 ~ 6849157 (+)
G44745 NA non-coding downstream 152850 6945655 ~ 6963524 (+)
G44755 NA non-coding downstream 177699 6970504 ~ 6970816 (+)
CI01000006_06122278_06122736 NA other upstream 661435 6122035 ~ 6122751 (+)
CI01000006_06104927_06109730 NA other upstream 680522 6104927 ~ 6109820 (+)
G43896 NA other upstream 1018335 5770089 ~ 5771775 (+)
G41996 NA other upstream 1665961 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 3054132 3734554 ~ 3736035 (+)
CI01000006_07167131_07168925 NA other downstream 373984 7166778 ~ 7168925 (+)
G44872 NA other downstream 563547 7356352 ~ 7387884 (+)
G45178 NA other downstream 829186 7607604 ~ 7683671 (+)
G45265 NA other downstream 1091062 7883867 ~ 7920355 (+)
G45336 NA other downstream 1226537 8019342 ~ 8021951 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018886 neu3.2 coding NC_007132.7 CM002905.2 21796663 ~ 21799292 (+)