CI01000006_06658495_06666257 (CHRDL2)


Basic Information

Item Value
gene id CI01000006_06658495_06666257
gene name CHRDL2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6658495 ~ 6666498 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_06658495_06666257.mRNA
ATGAACTACTTGAGACATCTTTTCATTTTGGTCATAATTCGATGCTACGTTCAGGGTGAAACAGAGGCAATACAACCAGGAAAAATGTCAGATGTTTTTTGCACTTTTAAAGAGAAGACATACAGGCCAGGTGATAGCTGGCATCCCTATTTGGAGCCCTTTGGATTCATGTTCTGCATGCGCTGTACTTGCACAGAAATGAGCACAGAACTCCTGCTGGTCTGCGGGCACCCATTAAAACCTGTAGGCATAATGGAAGCATTTACCAAACAGGGGAAACCTTTGCCAACCATGAGCTCTTCCCATCCCGTCAGTCGAACCAGTGCGTCATGTGCACTTGCTCTGTCAGGGGTCGCTCAGTTAGGGCCACACCATCGACACTGCGGGGGTCTCCCAGAGGCCTCAACCTGCAGACACTACACCTCAAGGGAGCTGCCGAAACTACTGTTAAAATTCTTCTGCAGCGCAGACATCAGAGAGACCTATTCTCATGGTGACGTGTGGCACCCGGCGCTGGGGAAGGTCTTGGACTGCATTCTGTGCACCTGCAGGGACGGCTTTCAAGAATGCAGGCGCATCACGTGTCCCAACCAGTATCCATGCCAACATCCCATAAAGATAGAGGGGAAATGCTGTAAGATTTGTCCAGAGCTCAAAGCAGAAAGCAACAGGACGGAGTGCTACCTTACTCAGGACAATAACAGTCTCCTGGTGTATAAAGTTGAAACCTCATCAGCTGCTCAGTCGGAAGATAAAGTACGGATGATTGCCATCGAGAGACAAGGAGCCACGGAAGTGGAGGTGCAAGTCTGGAAAACTGTTGAAGGTGTTTTGCATCTGATGGAGACAGGGGACGTTCAGAAGAAAGACCTCATCGAGCATCCGGAAAATTACATCTTGCTGACCACATTAGATGAGGACACTTGGAGAAAGTTCAAAGAAGAAGAGGACAAGCAGAAGGACTTCAGTAAGATTAGGAGCTGTGAAGACGGGATCAAGGAAGTGGTGAAGTACTTAAACCCTGAACAGCTGGACAGTCTTTGCACTTCTTAGTCTCCTCCCCGCTCTAACACTGTGCCATCCCAGTCTGACACTCATTTTATTACCAGAAGAGCACACACACCCACACTCACACAATGTGCATGTAGTACAAAACCAGATGCTGGCAGCAGGTAGTCTAAAGATCTCGTTTATTACTATGAGTCAGTTTATCGCAAGTCTTTATGAGTTTGACGTCCCAGAATTCTTTCTCTTTTTCAGAAGCCTTTAGGTCAGCCATTTTTCTTGCATTGCA

Function

symbol description
chrdl2 Acts upstream of or within dorsal/ventral pattern formation. Is expressed in hindbrain; midbrain; and tail bud. Human ortholog(s) of this gene implicated in megalocornea. Orthologous to several human genes including CHRDL2 (chordin like 2).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0009953 dorsal/ventral pattern formation biological_process

KEGG:

id description
K17280 CHRDL2; chordin-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_06658495_06666257.mRNA True 1294 mRNA 0.47 8 6658495 6666498

Neighbor

gene id symbol gene type direction distance location
CI01000006_06653186_06657164 NA coding upstream 1219 6653186 ~ 6657276 (+)
CI01000006_06598608_06603726 WDR73 coding upstream 54665 6598548 ~ 6603830 (+)
CI01000006_06438579_06447777 ELMOD1 coding upstream 209334 6438579 ~ 6449161 (+)
CI01000006_06432698_06437087 SLC35F2 coding upstream 220903 6432096 ~ 6437592 (+)
CI01000006_06319924_06332207 NA coding upstream 326288 6319924 ~ 6332207 (+)
CI01000006_06790435_06791964 NA coding downstream 123612 6790110 ~ 6792805 (+)
CI01000006_06800620_06801564 NA coding downstream 133862 6800360 ~ 6801622 (+)
CI01000006_06803516_06806038 NA coding downstream 136528 6803026 ~ 6806214 (+)
CI01000006_06825096_06826055 OR133-1 coding downstream 158451 6824949 ~ 6826452 (+)
CI01000006_06838948_06839904 NA coding downstream 172277 6838775 ~ 6840254 (+)
G44136 NA non-coding upstream 8384 6647874 ~ 6650111 (+)
G44074 NA non-coding upstream 183154 6473187 ~ 6475341 (+)
G44072 NA non-coding upstream 185973 6472186 ~ 6472522 (+)
G44053 NA non-coding upstream 233989 6421930 ~ 6424506 (+)
G44162 NA non-coding downstream 20821 6687319 ~ 6687577 (+)
G44164 NA non-coding downstream 21829 6688327 ~ 6688565 (+)
G44173 NA non-coding downstream 46201 6712699 ~ 6713471 (+)
G44180 NA non-coding downstream 100934 6767432 ~ 6767939 (+)
G44196 NA non-coding downstream 166503 6833001 ~ 6833270 (+)
CI01000006_06122278_06122736 NA other upstream 529820 6122035 ~ 6122751 (+)
CI01000006_06104927_06109730 NA other upstream 548907 6104927 ~ 6109820 (+)
G43896 NA other upstream 886720 5770089 ~ 5771775 (+)
G41996 NA other upstream 1534346 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 2922517 3734554 ~ 3736035 (+)
CI01000006_07167131_07168925 NA other downstream 500291 7166778 ~ 7168925 (+)
G44872 NA other downstream 689854 7356352 ~ 7387884 (+)
G45178 NA other downstream 955493 7607604 ~ 7683671 (+)
G45265 NA other downstream 1217369 7883867 ~ 7920355 (+)
G45336 NA other downstream 1352844 8019342 ~ 8021951 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019552 chrdl2 coding NC_007132.7 CM002905.2 21771814 ~ 21781158 (-)