G139487


Basic Information

Item Value
gene id G139487
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6304969 ~ 6374709 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU188831
CTAATAACTATGGAGGAAAAATGATATTTGCCAAAGGCACAAAGTTGCTGGTTCAGACAGgacgCAAAGCTGAACCATCATACTACAAGGTCAAACAGAACAAGAACAGCGACAACAAGGAATACTGTCTGGCCACCGGCTTTACCCAGAAGAATGCCACAAATGGAACGATGGAAGGTCCAGAAGCAGTCCTGTTTACCGGCCAAGAATTTTACAGCAGGATTAGCAGATCAAATTGCACTGAAGTCTCCGGGCCAAAAGGATGTGAAAAGGATTTAGGCGGTTTTAGAGAAGATGCGAAATCCAAGTTTGTGTCGCTGTGCATATTTATGCTGAGGATTCTGTTCTTCAAGACCATCATATTCAACGTCCTGATGACCTTTAAAGTGTGGTTGGGCTAAGaatcaacaacaacaagaacTCCAGATCCCGTCAGCATGTTCTGGAACCGGTCCGTCAGCCTCGACTGTgagaaagaagataaagaacGCTGTTAATCATTAATGCATGTTAACGCAACTTATAATATACTCAGCTGTATTATACTGCATTTATATCCACAAATATCCTCAAGATCAATAGGCTTTGGCTTAATGAATTCATTAATAACTGCCATGATTATGTagactattatttttatttttattattttttgtgctatactattattgtaatttttaaaatctttttttattctatagccattttttattttttgtatttccctctctctctctctttgtttcgcTTAGCTACCCATCCTGTAattcagatatatatatagttatttacctgttttttacctgttttaacattttttttgttatattttatttttttttactctcttttctagttttgaatgtgttttttttctaagctGCAGattctgtaattaatttagCTACTGTTTCACAGTGAGTGTCCTATTAGAATGTATCTTTTCTGTTCAATGAGGACgttgtagaataaaaaaagtatgtactCTTTGAACGTATCTATAATATACAAGTGTTGTcttgaaatataaaaatgcaaattattaataaaaattaagagcAGAATGTATAACTGTGTTTAGcttgttcttttttgtttttaattgttcacaaaaaactattttaatattttaaacattatttaaccccttaacaggcctttctgcctgacattacagcactaaatcttgaggatttctattcaagcattacataaaaagctttaatgtttgataaggaacattaaactgaaaagtgtgacTGTAgttataatagaaaatataaaaaaatatttaagtaaatctgctaatgtcaaaatatattggataaaatcataaaatgggCTTTTTTCCTGATCT
>TU188832
GTCTCCGGGCCAAAAGGATGTGAAAAGGATTTAGGCGGTTTTAGAGAAGATGCGAAATCCAAGTTTGTGTCGCTGTGCATATTTATGCTGAGGATTCTGTTCTTCAAGACCATCATATTCAACGTCCTGATGACCTTTAAAGTGTGGTTGGGCTAAGacagaatcaacaacaacaagaacTCCAGATCCCGTCAGCATGTTCTGGAACCGGTCCGTCAGCCTCGACTGTgagaaagaagataaagaacGCTGTTAATCATTAATGCATGTTAACGCAACTTATAATATACTCAGCTGTATTATACTGCATTTATATCCACAAATATCCTCAAGATCAATAGGCTTTGGCTTAATGAATTCATTAATAACTGCCATGATTATGTagactattatttttatttttattattttttgtgctatactattattgtaatttttaaaatctttttttattctatagccattttttattttttgtatttccctctctctctctctttgtttcgcTTAGCTACCCATCCTGTAattcagatatatatatagttatttacctgttttttacctgttttaacattttttttgttatattttatttttttttactctcttttctagttttgaatgtgttttttttctaagctGCAGattctgtaattaatttagCTACTGTTTCACAGTGAGTGTCCTATTAGAATGTATCTTTTCTGTTCAATGAGGACgttgtagaataaaaaaagtatgtactCTTTGAACGTATCTATAATATACAAGTGTTGTcttgaaatataaaaatgcaaattattaataaaaattaagagcAGAATGTATAACTGTGTTTAGcttgttcttttttgtttttaattgttcacaaaaaactattttaatattttaaacattatttaaccccttaacaggcctttctgcctgacattacagcactaaatcttgaggatttctattcaagcattacataaaaagctttaatgtttgataaggaacattaaactgaaaagtgtgacTGTAgttataatagaaaatataaaaaaatatttaagtaaatctgctaatgtcaaaatatattggataaaatcataaaatgggCTTTTTTCCTGATCT
>TU188834
CGAAAGATCATCTTCGGAAGAGGCACAAAACTCTTCATAGAAACAAgacgCAAAGCTGAACCATCATACTACAAGGTCAAACAGAACAAGAACAGCGACAACAAGGAATACTGTCTGGCCACCGGCTTTACCCAGAAGAATGCCACAAATGGAACGATGGAAGGTCCAGAAGCAGTCCTGTTTACCGGCCAAGAATTTTACAGCAGGATTAGCAGATCAAATTGCACTGAAGGTAAGAATTTAT
>TU188835
TGCTGGTGGTGGAAACAGAAAAATCATTTTTGGCTCCGGAACTAAACTGACTGTTGAAACAAgacgCAAAGCTGAACCATCATACTACAAGGTCAAACAGAACAAGAACAGCGACAACAAGGAATACTGTCTGGCCACCGGCTTTACCCAGAAGAATGCCACAAATGGAACGATGGAAGGTCCAGAAGCAGTCCTGTTTACCGGCCAAGAATTTTACAGCAGGATTAGCAGATCAAATTGCACTGAAGGTAAGAATTTAT

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0030217 T cell differentiation biological_process
GO:0046649 lymphocyte activation biological_process
GO:0045321 leukocyte activation biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
TU188831 True 1357 TUCP 0.32 5 6304969 6374709
TU188832 False 1116 lncRNA 0.30 3 6304969 6309601
TU188834 False 244 lncRNA 0.43 2 6310200 6332189
TU188835 False 260 lncRNA 0.43 2 6310200 6362969

Neighbor

gene id symbol gene type direction distance location
LOC103029970 NA coding downstream 99120 6202808 ~ 6205849 (-)
LOC111194226 NA coding downstream 282373 6021098 ~ 6022596 (-)
LOC103034342 NA coding downstream 306992 5977267 ~ 5997977 (-)
b4galt2 b4galt2,LOC107700994,LOC107557142,LOC107599894,LOC107657457 coding downstream 406169 5624859 ~ 5898800 (-)
ccdc24 NA coding downstream 706194 5567184 ~ 5598775 (-)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277,LOC107722067 coding upstream 64940 6439649 ~ 6473720 (-)
lamc2 NA coding upstream 136388 6511097 ~ 6549467 (-)
LOC103038610 NA coding upstream 329660 6704369 ~ 6717087 (-)
LOC103024388 chd8,LOC107738141 coding upstream 394612 6769321 ~ 6813886 (-)
LOC103040079 cbln12,LOC103040079,LOC108438942,LOC107668986,LOC107591379,LOC108267329,LOC107704284,LOC107738140,LOC107557939 coding upstream 445119 6819828 ~ 6826665 (-)
G139580 NA non-coding downstream 3212 6301526 ~ 6301757 (-)
G139579 NA non-coding downstream 5847 6298870 ~ 6299122 (-)
G139501 NA non-coding downstream 58240 6245435 ~ 6246729 (-)
G139563 NA non-coding downstream 62735 6236850 ~ 6242234 (-)
G139497 NA non-coding downstream 72887 6198483 ~ 6232082 (-)
G139500 NA non-coding upstream 31513 6406222 ~ 6408592 (-)
G139588 NA non-coding upstream 134643 6509352 ~ 6581814 (-)
G139624 dhx9 non-coding upstream 354996 6729705 ~ 6731658 (-)
G139618 dhx9 non-coding upstream 361384 6736093 ~ 6738942 (-)
G139631 NA non-coding upstream 379273 6753982 ~ 6754437 (-)
LOC111194281 NA other downstream 250236 6022609 ~ 6054733 (-)
G139489 NA other downstream 294102 6009053 ~ 6010867 (-)
G139105 NA other downstream 974164 5330078 ~ 5330805 (-)
G139074 NA other downstream 1028501 5276106 ~ 5276468 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 1966772 4330871 ~ 4338197 (-)
G139587 NA other upstream 42676 6417385 ~ 6430319 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other upstream 190194 6564903 ~ 6689723 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other upstream 467271 6841980 ~ 6944134 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other upstream 794256 7168965 ~ 7182783 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 2296315 8671024 ~ 8711099 (-)

Expression


Co-expression Network