G140003


Basic Information

Item Value
gene id G140003
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9222479 ~ 9223439 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189505
GCCAGAGCCCGAGAGAGCAGACTTACAGTAaatggctttgctctctcttggtgggtagatggcgctctcttcccctTGTTACCTCCACTGTGTTGATGGATAGCACATGCATCTCTTGGCAGATGAACTGGAGTGAAGGATCCAGCGCTTTTCTCTGGTGCAGCACTGGTTACAGTTGTGAAAGAGAAGAGTAGGTGGCTGACTTTAGATAGTGTCCAGAGAATTGAAAGTCAAAGTCTTCTATTGGTTCTGGTCTAGCCACTCAATTTCCTCTGTGCTTTCCTTAGTCCagacctttttttcttcttcagtcGTCTGTCTGTCCATGGCTCCTTGTGGAAGATTGGATTTTGTTGCTCTTTAGTCAACGTCCTTGTTGGATGTCGATGGGTTGTTGGTATGTTGACCGCAGTTGAGTCTGTCTGCTGGACTGGTGGACTGGTGGTCTGTTGAGGTCCTGCAGTTGTTACAGTGCTCGTGGTGAGGGTAGTAGTCGTGATGACTGTGCTAGCAGTACTTTCAAACTGCAGTGGTTGGGTGGTCACTGGTGCCTCAGAAGACGTCATCTTTGTGGTCCTTGGCGTTGTCGTCTGTTGCTGTGGGGGGATGGTTGTTGATGGTGCAGATTCTTCTGTAGTTGATGGTGATTGGGTGATGGATGTTGTTCTTGTTGTTGGAATTGGCAGGTCATGGGTTGATTTGGTGGTTTGATTGATTGTAATCGTTGGTGTTCCTTTTGGCATTTGATTTTCCGTTGATGTTGGCAGCTTTGCAGTTGGTACAGCGGGAGTTGTAGCCTTTGGGCTCGTTGTACGTTCGGTTGTCGCTGGTGTTGTTGGTGTTGTTGTAGAGGGAGTGGTCCAAGTGGGTGGTAGTGGTAAAATGGGGGGTTTCCTTGTCAACTGGTCTATAGTCTCTTTGGCCCAAGCACTTTCCGGATCAGAGCATATATAATTGCCCA

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU189505 True 961 lncRNA 0.48 1 9222479 9223439

Neighbor

gene id symbol gene type direction distance location
LOC103031272 NA coding downstream 81389 9138794 ~ 9141090 (-)
LOC103022255 epha4,epha4a,LOC108440631,LOC107583108,LOC107668967,LOC107706332 coding downstream 154903 8986473 ~ 9067576 (-)
LOC103021520 spsb4a,LOC103021520,LOC108440634,LOC107583109,LOC108267127,LOC107706335,LOC107694659,LOC107561810 coding downstream 596490 8545490 ~ 8625989 (-)
nmnat3 nmnat3 coding downstream 1098999 8097854 ~ 8123480 (-)
rbp1 rbp1,LOC108442846 coding downstream 1129350 8081916 ~ 8093129 (-)
LOC103042138 puf60a,LOC108413493,LOC108267407,LOC107599879,LOC107657443 coding upstream 309384 9532823 ~ 9563587 (-)
LOC103042459 nrbp2a,nrbp2,LOC108413492,LOC108267406,LOC107733885,LOC107599881,LOC107657444 coding upstream 350901 9574340 ~ 9672214 (-)
bfsp2 bfsp2 coding upstream 529225 9752664 ~ 9761502 (-)
LOC103037289 myl12.2,LOC103037289,LOC107098295,LOC107732590,LOC107746904,LOC103135689 coding upstream 599076 9822515 ~ 9830153 (-)
LOC103038251 prpf4b,LOC108267396,LOC107598186,LOC107670278,LOC107738454,LOC107554722,LOC106597319 coding upstream 626786 9850225 ~ 9861792 (-)
G139994 NA non-coding downstream 40084 9176323 ~ 9182395 (-)
LOC111194195 NA non-coding downstream 40090 9181846 ~ 9182389 (-)
LOC103030729 NA non-coding downstream 45337 9176338 ~ 9177142 (-)
G139977 NA non-coding downstream 126315 9095957 ~ 9096164 (-)
G139967 NA non-coding downstream 186359 8960434 ~ 9036120 (-)
G140028 NA non-coding upstream 228021 9451460 ~ 9451731 (-)
G140029 NA non-coding upstream 228666 9452105 ~ 9452566 (-)
G140114 NA non-coding upstream 254396 9477835 ~ 9506456 (-)
G140116 NA non-coding upstream 257448 9480887 ~ 9482270 (-)
G140108 NA non-coding upstream 291876 9515315 ~ 9525212 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other downstream 511380 8671024 ~ 8711099 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other downstream 2039696 7168965 ~ 7182783 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 2278345 6841980 ~ 6944134 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 2532756 6564903 ~ 6689723 (-)
G139587 NA other downstream 2792160 6417385 ~ 6430319 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 473716 9697155 ~ 9714037 (-)
G140342 NA other upstream 811964 10035403 ~ 10103457 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 1087658 10311097 ~ 10345498 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other upstream 1287650 10511089 ~ 10514807 (-)
G140772 fam134b other upstream 2382796 11606235 ~ 11610529 (-)

Expression


Co-expression Network