G213380 (LOC108262836,LOC108429586)


Basic Information

Item Value
gene id G213380
gene name LOC108262836,LOC108429586
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 2930410 ~ 2933760 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU289678
CGGGAGGCTGCTCACAAAGCTCTGGAGACTTACAGCATCGTGAACATGgagCTTAAACACTTGACATCCAGGCGCCCCCACAGCGTTCTCACAGCAGCTGTAACGCGTCTCTACTCCACCTGGTACTCGGTTTTCTATGACCTTCCCGTAATGGTAATTACACTCCTCTTTACGAGTGTGTTTTCCAGTCTGGCTAACCGAGAAAGAAGTTCCACAGCGGCAGCAGATCCTTCTGGaacCATCTCCAGCTCCCTTCTTTGCCTCTCCTCCATActgaacagcagcaccagcttTGTCCGGGTGTCTGCGAGGGTAGTTGTTCTCCCTCAGC

Function

NR:

description
PREDICTED: RNA exonuclease 1 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU289678 True 331 lncRNA 0.53 4 2930410 2933760

Neighbor

gene id symbol gene type direction distance location
znf827 znf827 coding upstream 32881 2723598 ~ 2897529 (+)
prmt9 prmt9 coding upstream 807959 2099490 ~ 2122451 (+)
nr3c2 nr3c2,LOC107598757 coding upstream 1030316 1690077 ~ 1900094 (+)
tnip2 NA coding upstream 1555559 1365801 ~ 1374851 (+)
hmgb2 hmgb2,hmgb2a,LOC100707400,LOC102792727,LOC107752228 coding upstream 2402347 519187 ~ 528063 (+)
frem3 frem3,LOC107550584,LOC107654895,LOC107734585 coding downstream 443091 3376851 ~ 3441060 (+)
LOC103022278 NA coding downstream 521188 3454948 ~ 3475096 (+)
LOC103021981 NA coding downstream 545724 3479484 ~ 3499830 (+)
smarca5 smarca5,LOC107703846,LOC107594298,LOC107757072 coding downstream 706793 3640553 ~ 3661294 (+)
rnf150 rnf150,LOC107746087,LOC107729769,LOC107700883 coding downstream 1497735 4431495 ~ 4484033 (+)
G213376 NA non-coding upstream 12689 2917519 ~ 2917721 (+)
G213367 NA non-coding upstream 42185 2857453 ~ 2888225 (+)
G213365 NA non-coding upstream 53538 2827164 ~ 2876872 (+)
G213359 NA non-coding upstream 71193 2773030 ~ 2859217 (+)
G213386 NA non-coding downstream 34725 2968485 ~ 3004139 (+)
G213400 NA non-coding downstream 65412 2999172 ~ 3044253 (+)
G213403 NA non-coding downstream 104770 3038530 ~ 3038893 (+)
G213422 NA non-coding downstream 181013 3114773 ~ 3154761 (+)
G213433 hhip non-coding downstream 257928 3191688 ~ 3192463 (+)
LOC103042715 NA other upstream 1579014 1340751 ~ 1351396 (+)
scrg1 NA other upstream 2418851 506101 ~ 511559 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227,LOC107676676 other upstream 2680679 229235 ~ 249731 (+)
LOC103044168 NA other downstream 360168 3293928 ~ 3358194 (+)
G213555 NA other downstream 754809 3688569 ~ 3688992 (+)
inpp4b inpp4b,LOC107657998 other downstream 966482 3900242 ~ 4367145 (+)
G213715 znf330 other downstream 1464825 4398585 ~ 4428962 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other downstream 1577179 4510939 ~ 4590452 (+)

Expression


Co-expression Network