G4401


Basic Information

Item Value
gene id G4401
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 17347662 ~ 17348010 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU5942
atttttgagtgtatagactttaaatatattcacacctaagatatattttcaaaaatggttagactagagtgtttatgagttgaaagaataataatattgatgatagttcattacatggcttattaattattactttgacagaATACGTGaagagcatcaggcggatttatttttcttgataatcaataatcacacctctaggatacatgtagatactaaaaacctgacactcagagcagcctatgcctttcagtattttaatcaggacacacaaagaaaactatatttatacaaaaatataaatttttagtctaaataaattcaaatgtttagggcaaaataactactt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5942 True 349 lncRNA 0.28 1 17347662 17348010

Neighbor

gene id symbol gene type direction distance location
LOC111192859 sae1,LOC107718284 coding upstream 655903 16689234 ~ 16691759 (+)
LOC103044410 klc3,LOC108425834,LOC107601696,LOC107743695 coding upstream 703842 16633323 ~ 16643820 (+)
mark4 mark4,si:dkey-31m14.7,LOC107585548 coding upstream 729732 16561486 ~ 16617930 (+)
LOC107197545 NA coding upstream 805219 16538471 ~ 16542443 (+)
LOC103030966 NA coding upstream 811139 16531349 ~ 16536523 (+)
lsamp lsamp coding downstream 106340 17454350 ~ 17873816 (+)
LOC111192370 NA coding downstream 669749 18017759 ~ 18022389 (+)
LOC103030597 LOC108412477 coding downstream 776684 18124694 ~ 18131953 (+)
sidt2 sidt2 coding downstream 790014 18138024 ~ 18166677 (+)
LOC103032687 gmfg,LOC103032687,LOC108277844,LOC107757325,LOC107679065,LOC107090391 coding downstream 902913 18250923 ~ 18256343 (+)
G4346 NA non-coding upstream 158416 17189032 ~ 17189246 (+)
G4337 NA non-coding upstream 189811 17157644 ~ 17157851 (+)
G4334 NA non-coding upstream 192566 17154760 ~ 17155096 (+)
G4331 NA non-coding upstream 202457 17144921 ~ 17145205 (+)
G4277 NA non-coding upstream 666443 16679405 ~ 16681219 (+)
G4406 NA non-coding downstream 18837 17366847 ~ 17367251 (+)
G4420 NA non-coding downstream 101384 17449394 ~ 17513800 (+)
G4451 NA non-coding downstream 499754 17847764 ~ 17851443 (+)
G4456 NA non-coding downstream 534578 17882588 ~ 17921005 (+)
LOC111192366 NA non-coding downstream 542218 17890228 ~ 17943162 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 724593 16619046 ~ 16623069 (+)
G4221 NA other upstream 801808 16542942 ~ 16545854 (+)
LOC103040601 NA other upstream 1521559 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 2184706 15072840 ~ 15162956 (+)
G3790 NA other upstream 2308748 15038555 ~ 15038914 (+)
LOC103039709 NA other downstream 662168 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 693279 18041289 ~ 18422356 (+)
G4550 sik3 other downstream 723954 18071964 ~ 18073663 (+)
G4612 NA other downstream 1411365 18759375 ~ 18759858 (+)
G4775 LOC108411134 other downstream 1812721 19160731 ~ 19165631 (+)

Expression


Co-expression Network