G187573


Basic Information

Item Value
gene id G187573
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5797876 ~ 5798568 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254346
aaaaactttaaacatgaataaCTTGTGTAATTCATGACTTCAGTCCACGCTATAGATTCAATTTTGTCATTATGTGGCATAAAAAGGGGCAATAAAATTGTTCCCATCACAAAGAAatggcaaaagaaaaaaagtagaaactaaaaattagaaaataaagattcatttaaaaaacactcacaactcatctttatctttatcttgttGTGAGTTTGATTTAGAGTCTTTCTGCGTGGAGGTTTTTGCTTTGGGTTTTTTGCTTTCTGTGCCACCAGTCTTTTTAGACACTACTTTTACTGTCTTCTTGTCCACTGACTTCTCCTTTGTTTTGTCTGCTGTTTTGGCTTTtgtttttttctgctgttttggCCTTTGTTTTGTCTGCCTCTTTCGTTTTTCCTGATGGTTTCGCTTTCGTCTGGGTGGCTGTTTTGGCTACTTTTACCGTCTTCTTGTCCACAGACTTCTCTTTTTTGTCCACTGATTTGtcctttgttttgtttgcagatTTAGCCTTTGGCTGCGCATCCTTTTTAACGTCTTTGTTGTCTGTCTTTGTATCAGCTGCAGTGTCGGTCTGTTCATCAGAGGCTTTGCTGGGCTGTTCCTGCACAGGTGTCTCCGTCTTGTCCTGCTCTGTGTTCTGTGGCTCTGACTTGTCCTTCTCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254346 True 670 lncRNA 0.39 2 5797876 5798568

Neighbor

gene id symbol gene type direction distance location
c22h1orf50 cunh1orf50,zgc:112255,LOC107654415,LOC107654365,LOC107565729,LOC107582467,LOC107756638,LOC107751182 coding downstream 21731 5771810 ~ 5776145 (-)
LOC103046070 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645 coding downstream 34364 5746890 ~ 5763512 (-)
LOC103022065 NA coding downstream 331001 4994997 ~ 5466875 (-)
per3 per3,LOC108441424,LOC107654358,LOC107592896 coding downstream 825030 4946572 ~ 4972846 (-)
LOC103024768 LOC108441423 coding downstream 863272 4900015 ~ 4934604 (-)
LOC103023821 epha8,LOC107565732,LOC107756634,LOC107654383,LOC107582396 coding upstream 118938 5917506 ~ 6076714 (-)
LOC103042703 LOC103042703,LOC108437606 coding upstream 541060 6339628 ~ 6378764 (-)
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding upstream 596822 6395390 ~ 6502396 (-)
LOC103022878 NA coding upstream 1013840 6812408 ~ 6828711 (-)
sox13 sox13 coding upstream 1099423 6897991 ~ 6948954 (-)
G187569 p3h1,LOC107756620 non-coding downstream 14284 5782158 ~ 5783592 (-)
G187555 NA non-coding downstream 91534 5700872 ~ 5706342 (-)
G187548 NA non-coding downstream 288145 5508285 ~ 5509731 (-)
LOC111195361 NA non-coding downstream 296107 5500995 ~ 5501769 (-)
G187545 NA non-coding downstream 305210 5491381 ~ 5492666 (-)
G187578 NA non-coding upstream 30100 5828668 ~ 5835626 (-)
G187580 NA non-coding upstream 54849 5853417 ~ 5854325 (-)
G187581 NA non-coding upstream 55892 5854460 ~ 5854832 (-)
G187587 NA non-coding upstream 109952 5908520 ~ 5908818 (-)
G187588 NA non-coding upstream 111498 5910066 ~ 5910356 (-)
svbp svbp other downstream 274955 5518793 ~ 5522921 (-)
phf13 phf13 other downstream 292129 5493412 ~ 5505747 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other downstream 808618 4974228 ~ 4989258 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 1636922 3970934 ~ 4160954 (-)
LOC107197677 NA other downstream 2018156 3778014 ~ 3779720 (-)
LOC111195363 snrpe other upstream 1179083 6977651 ~ 6982840 (-)
pdrg1 pdrg1 other upstream 1390048 7188616 ~ 7193252 (-)
G187946 mybl2,mybl2b other upstream 1589829 7388397 ~ 7391026 (-)
ghrh ghrh,LOC103034597,LOC108438619 other upstream 1610554 7409122 ~ 7419806 (-)
LOC111195437 NA other upstream 4152516 9951084 ~ 9956317 (-)

Expression


Co-expression Network