G187587


Basic Information

Item Value
gene id G187587
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5908520 ~ 5908818 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254367
tttgctattttagccatttctcattttctgcaaataaatgctataaatgacagtatttttatttggaatttgggagaaatgttgtctgtagtttatagaataaaacagcaatgttcattttactcaaacataaacctataaatagcaaaatcagagaaactgattcagaaactgaagtgctctcttacttTTTCAAGAGctcaattattataatttaattttttttacccaaaatGTACCAGCTTTGgcgtggttttctctcctgtgaggttctgagtattgaaaaacagggtcaaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254367 True 299 lncRNA 0.30 1 5908520 5908818

Neighbor

gene id symbol gene type direction distance location
c22h1orf50 cunh1orf50,zgc:112255,LOC107654415,LOC107654365,LOC107565729,LOC107582467,LOC107756638,LOC107751182 coding downstream 132375 5771810 ~ 5776145 (-)
LOC103046070 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645 coding downstream 145008 5746890 ~ 5763512 (-)
LOC103022065 NA coding downstream 441645 4994997 ~ 5466875 (-)
per3 per3,LOC108441424,LOC107654358,LOC107592896 coding downstream 935674 4946572 ~ 4972846 (-)
LOC103024768 LOC108441423 coding downstream 973916 4900015 ~ 4934604 (-)
LOC103023821 epha8,LOC107565732,LOC107756634,LOC107654383,LOC107582396 coding upstream 8688 5917506 ~ 6076714 (-)
LOC103042703 LOC103042703,LOC108437606 coding upstream 430810 6339628 ~ 6378764 (-)
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding upstream 486572 6395390 ~ 6502396 (-)
LOC103022878 NA coding upstream 903590 6812408 ~ 6828711 (-)
sox13 sox13 coding upstream 989173 6897991 ~ 6948954 (-)
G187581 NA non-coding downstream 53688 5854460 ~ 5854832 (-)
G187580 NA non-coding downstream 54195 5853417 ~ 5854325 (-)
G187578 NA non-coding downstream 72894 5828668 ~ 5835626 (-)
G187572 NA non-coding downstream 109557 5797148 ~ 5798963 (-)
G187573 NA non-coding downstream 109952 5797876 ~ 5798568 (-)
G187588 NA non-coding upstream 1248 5910066 ~ 5910356 (-)
G187622 NA non-coding upstream 128537 6037355 ~ 6038183 (-)
G187623 NA non-coding upstream 131525 6040343 ~ 6182890 (-)
G187666 nucks1,nucks1a,LOC108255091,LOC107654381 non-coding upstream 333274 6242092 ~ 6254464 (-)
G187669 NA non-coding upstream 365113 6273931 ~ 6274131 (-)
svbp svbp other downstream 385599 5518793 ~ 5522921 (-)
phf13 phf13 other downstream 402773 5493412 ~ 5505747 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other downstream 919262 4974228 ~ 4989258 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 1747566 3970934 ~ 4160954 (-)
LOC107197677 NA other downstream 2128800 3778014 ~ 3779720 (-)
LOC111195363 snrpe other upstream 1068833 6977651 ~ 6982840 (-)
pdrg1 pdrg1 other upstream 1279798 7188616 ~ 7193252 (-)
G187946 mybl2,mybl2b other upstream 1479579 7388397 ~ 7391026 (-)
ghrh ghrh,LOC103034597,LOC108438619 other upstream 1500304 7409122 ~ 7419806 (-)
LOC111195437 NA other upstream 4042266 9951084 ~ 9956317 (-)

Expression


Co-expression Network