CI01000013_05168475_05174273 (CBLN1.S, CBLN1)


Basic Information

Item Value
gene id CI01000013_05168475_05174273
gene name CBLN1.S, CBLN1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5167605 ~ 5174273 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_05168475_05174273.mRNA
CTCGCCATGTCTCTTTTCCTGCTAAAACCTGCTCAGTGATCTCATTTATTAAATGTCATGTAGGAACTGCGCTGGCGCAGAATGAGTCCTGTCAGAAAAATGAGAGTCGAGCGGGCCTCAGACGCCACATCCCATCAACATGTTCAAACTCTGAGAACGAGACAGAACCCATCGTACTGGAGGGGAAATGCTTGGTCGTGTGCGACTCAAATCCCACCTCGGACCCCACTGGGACGGCTCTTGGGATTTCGGTGCGTTCTGGAAGCGCCAAAGTGGCTTTTTCCGTGGTGAGGAACACGAACCACGAGCCGTCGGAGATGAGCAATCGAACAATGGTGATCTATTTCGATCAGGTACTTGTGAACGTTGGTAGAAGTTTCGATGAGGAAAGGAGCAATTTCTTCGCCCCGCGCAAAGGGATATACAGCTTTAATTTCCACGTAGTGAAAGTGTATAATCGTCAAACGATCCAGGTGAGCCTGATGCACAACGGCTGGCCAGTGATCTCCGCCTTCGCCGGGGATCAGGACGTCACACGTGAAGCGGCCAGTAACGGCGTCCTGATTCAAATGGAGAAAGGTGACCGCGCATACCTCAAGCTGGAGCGAGGCAACTTGATGGGCGGCTGGAAGTACTCCACCTTCTCCGGCTTCCTGGTCTTCCCTCTGTAGAGGAGGGGCACGCCACGGAAGGACTATTGCTCTTTAGCTCGCCGGCTTGTGGGAGATAGAAGGGGGCGGATGAGAGATAGAATGATAGCGAGAATGTAAAGAAAACATATAGGAAGAGAAAATTTAGTGTGGCAGGCTCTCAGTCGCACTCACTTTGCTCTGCTGCTTGACTACAGCTCTGGACAGCCAAAACTTTTTTTTTATTATCCTTATGATAATTGAAATAAGTTGGAAAGAAAGCATACAGAGGATCGTACCCCTTCCCACCCCCCTCTTACTCATCCCATCACCAATCCACCCTCAAAAGTCTTCAGCTGCTTTAAGGATTGTCCTTCAACAGCCCAGACCCCCATTTCACACAGGTCACATCTTTGTATATTCTCTCCATACGTATACATACTGTGAGTTTCAAAATGCCATTGTCATTCCTCTCAGTCCAGTCGCCCCTTCTTTCTCTGGCTTCCTCCAGCTCACACTTTCTTGTCTCTGAGAGGGCGTCTTTGCTCTGTCATGACTGAAGGATCTCTGAATCCCCACAAGAAGACTGCATACTGGATATATAAATACATAAAAAAGTTTCTATATGATTATGATATACTCAATGCCTAAATGAATCTGGTCGACTCTCTGTATTTCTGTATTTCAGTGTTAATACTTAGTGATTGTGTGTGGATTTTCAGGCTGCTGTCCAACTACCAATGCTTCTTGTTTTTGTTTCGGTCAAAAATGTGGCTAAGATGAAACTATATCAGAAATACTATAAAGTACAAAGTTTTATTATCATTGATTGTAAAATATATGTGAATATTTAGCAGACAAAAACCTCCCTTTTAATCAATTAACCATTGTTTTTTTCTTTAATTCAATAAA

Function

symbol description
cbln1 Orthologous to human CBLN1 (cerebellin 1 precursor).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_05168475_05174273.mRNA True 1541 mRNA 0.45 4 5167605 5174273

Neighbor

gene id symbol gene type direction distance location
CI01000013_05008046_05022184 N4BP1 coding downstream 145033 5007872 ~ 5022572 (-)
CI01000013_04980677_04981525 SIAH1, SIAH1A coding downstream 185457 4979478 ~ 4982148 (-)
CI01000013_04884419_04897842 ST3GAL2 coding downstream 269763 4883297 ~ 4897842 (-)
CI01000013_04843421_04845524 NA coding downstream 322081 4843010 ~ 4845524 (-)
CI01000013_04824249_04836061 ARIH1 coding downstream 331544 4823906 ~ 4836061 (-)
CI01000013_05197841_05231302 TMEM189 coding upstream 23083 5197356 ~ 5231568 (-)
CI01000013_05233187_05234747 NA coding upstream 58799 5233072 ~ 5234840 (-)
CI01000013_05255572_05261556 ZNF423 coding upstream 81117 5255390 ~ 5261609 (-)
CI01000013_05318806_05354911 ZNF423 coding upstream 144533 5318806 ~ 5354911 (-)
CI01000013_05364044_05374057 NA coding upstream 188840 5363113 ~ 5374415 (-)
G81498 NA non-coding downstream 11309 5156087 ~ 5156296 (-)
G81463 NA non-coding downstream 17279 5149942 ~ 5150326 (-)
G81494 NA non-coding downstream 17941 5149361 ~ 5149664 (-)
G81472 NA non-coding downstream 45531 5121792 ~ 5122074 (-)
G81462 NA non-coding downstream 54798 5112548 ~ 5112807 (-)
G81507 NA non-coding upstream 3494 5177767 ~ 5178074 (-)
CI01000013_05561156_05569165 NUP93 non-coding upstream 394258 5561070 ~ 5569165 (-)
G81539 NA non-coding upstream 408323 5582596 ~ 5583268 (-)
G81540 NA non-coding upstream 410728 5585001 ~ 5585201 (-)
G81543 NA non-coding upstream 432884 5607157 ~ 5609589 (-)
G81032 NA other downstream 417044 4748809 ~ 4750561 (-)
CI01000013_04561253_04567647 MAP2K1 other downstream 608702 4560340 ~ 4567647 (-)
G80443 NA other downstream 1101588 4064942 ~ 4066017 (-)
G80399 NA other downstream 1261365 3904067 ~ 3906240 (-)
G80271 NA other downstream 1443998 3719433 ~ 3723607 (-)
G81547 NA other upstream 565253 5739526 ~ 5744038 (-)
CI01000013_05883498_05884071 CHTF8 other upstream 707776 5882049 ~ 5884071 (-)
CI01000013_07339918_07367774 NA other upstream 2165436 7339709 ~ 7367774 (-)
CI01000013_09309438_09335834 MICAL3A other upstream 4132763 9307036 ~ 9336077 (-)
G85170 NA other upstream 5305588 10479861 ~ 10480700 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012733 cbln1 coding NC_007129.7 CM002902.2 18104235 ~ 18110032 (+)