CI01000013_05008046_05022184 (N4BP1)


Basic Information

Item Value
gene id CI01000013_05008046_05022184
gene name N4BP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5007872 ~ 5022572 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_05008046_05022184.mRNA
AATAGTAACAATAGCTGTAGTGTGGTATTTTGTGTTATGTTATTTTTTAAACTATGGTTACCTCTTTCAACAGACTCTTATCTGCAATCAGAGCATAGACCTATCAGCAACTATGATCAGCAAACGTCGTCGTCTGCTGATGACGTCCGCGGGGTTTTCCGGGTGCGACGGCTTGAGATGTAGGCTAGCAGGCTAACTGAGAGCAGCGTCAAAACACAGATACTACAGCGCTGTTGACAAACGTCAAGAGACAGCGGGTTGGAAGCTAACATGAAAGGGGTAAACGATTCATTTTACAAGTAGTGGTTTTAAAAGTGAAGTCGCCGTGGTCAACATAGATTGATATAGCTTAAAAAATAAAATGTCAACAACGCGGCCCCTCCTCGGGATGAAGCGGATCACCGAGGTAACTTGCACGGAGCCGCCGGGAGGCAGACTATCCCCGACCGCCAGTAGAACACAGTCACAGCCGCTCACCGTAGATGACTTCACGGTGCACGAGGACAAGCAGGCAGAGCTCAAATGCAGTAAACCGAAGGTCGAACAGGTTTTCCAAGTGACATTCACGATTATTGGGCTCTTGGATCACACTGGAGCCCACGGAAGTAAGGCTTCCAGACAGATCTGGCTCCAGCTGAAGGGGAAAAAGGAGGATGTGTTTAAAGCGAAGGAGTATGTGAAAGGCCTGTGTGACCCAGAACTTCAGAAAGAAGAGTGGTACCCAGTGGACATGCACTGCATTTTCGCTGGTGCTCGTGGACTCTTTTTGGACCGGCTGCTTAGAGACACGAGTGCAGAAGTCCAAGTTTTAGAGCCGGGCCGACTGAGGTTGAGTGGGAGCGCAGAGGCCGTCGTTATGGCTCAAAGTCGCGTTCAACAGTTTGTTGCCCTCTTTCAGGAGAAGCGGAGCTTGCCAGCTGACAGGGAGCCCTTGGTAAAGCGCACTTTTAAGACTTTTGTGGAGGACCGGGCTGATAAATATGCCATGGAGCTGCTGTTGCTGCCCAGTGCCCTCAAAGAGGAACTTTTGGGCTTGGCCCAAAGCCCCACACAACCTATAGCTATCATAGACCTTGAGCAGGACCGCTCTCAAACCAGCACACCCGTAACTGACCTCTCCAACCGTATCCTGGACACCACTTTTGAGGACAAAACCTCAGGTCCTGTGACCACTCCTGACATTATGCCAGGTCTCAACGGTCGTTGCAACAAGCGACGGTCCTCAGAAAGCGAGCAGAGGGACACTAAACGGCAATACTCGCTGGAGAGAAGAGAAGAGGAGCAGTGGGAAGAACGGCAGCGAGAGCCAAGTCAAACTTGGGCTGTTGCTCCTGCAAAGGGGACACTAACTGCTAGTGAAGCGACAAATGAAAGTGAGGCGGTGACTCCTGAGACTAACTTACGCTGTCTTGTTAACTTCTTCCGAACCATGGGCTACCAGCAGGAGGTGGTGGAGCGGGTGGTACGGGAGACGGGGCAGACGGAGGACACATATTTACTGCTGGAAAGAATTGTGGAGGAGACCCAGAAGACCCAGAGCACGCAAGGATCCCAGAGCACCTATTGCATACCCGACCCGTCCTCCTGCGTAAACGCCTCATCTACACTCACCTCCACCAGGGTCAAAGAGAAGGAACGGGTACAGATGCGAGCTCTCGAGAGATCAGAGATCAAGTGCAAAGAAAACATTAGACCTGCTAGTATTAATGGCATAGGTCAGAAGAACCAGACAAGCAGCGTGCCACTGGCCTCAGCCACTCTTAAAAGAAACAATGGCGCACAGAATGACATACGTGAAGTTATCATCATCGACGACGATGATAACGACTTCACAGAGATAGAGAGGAAGCCCAGAGTGGCTACACTTGATTTGAAGTCAGAGTCCCGATTTGATTACCTACCCCGCGGTAGCTCTCAAACAATGGTTCCTGTGCGGACGGAGAGTGTGACCAATCTCCGCAGCTCTTCTCAAGGCCCTCCTCTCCGGACCACCGACACACGACCTGGTTGCTCTTACCAGACGCTCCCTGGAAGGGCACCTTTACCTCGCTCTGAGGCACATAGCACCTCTGAACCAGCACCCCTCACCGGCATGTCTCGTTTCCAGCAGTCTCTGAGAACCCCCTACAGACTAGTCCTACAGAATGAACCGGGCTGCCCCAATCTGCGACACATCATCATCGATGGCAGCAATGTGGCAATGGCACATGGACTCCATCGGATCTTTTCTTGTCGTGGGATTGCTATAGCTGTAGAGGCCTTTTGGCGCAGAGGGCACAGAGAAATCACTGTCTTCGTTCCTCAGTGGAGACAGAAGAAAGACCCTAACATCACTGAACAACACTTTCTGAACCAGTTGGAGAACCTGCGACTTCTTTCTTTTACCCCGTCTAGAGAAGTGTGTGGACAGAGAATTTCCTCCCATGATGACAGGTTCCTGCTTCATCTGGCTGAGAAGACAGGAGGGGTCATTGTCACCAATGACAACCTGAGGGACTTTGTGAGCCAGTCAGAAGCGTGGAGAAGGATTATTCAGGAGAGACTCTTGCAGTTCACCTTCGTAGAAGACCACTTTATGATCCCAGATGACCCACTTGGAAAGCATGGACCTCACCTAGACGAATTTCTACTTAAAGGCACTCGAGGTAGTCCCATAATGCCCCCCCTGAGGACAGACCTTCGGGCAACCCCGTCAGTTTACACCCTGGCAGCACAGTCCACAGCACATCCCTCTTCCCCTTCCCACTGGCCACACTCCGGCCCTCCAGACTGGCACCTTCCTCGACCGTCCCCTTCTCCACCCCCGCAGCGGTCGCCCTCGGAAACCTCAGAGCTCAAAAGGAAGCTGTACGACATCTTTCCTGACCAAAAGCAGCGTATTGACCGTATCCTCAGTGACAACCCATACATGAGGGACCTAAATGCGCTGTCGGGCCTCTTGCTGGGCTGACGCACACTTAATTAAACACAAATTTACAGTTTTCACTCTTGTGCAACATAATTTAAAGTTTAAAATTATTTTTAAGGAATACCATGATGGAAAAGCGCTGTTACAAGCTTTTTTTCAAGGGGACTCTGTTCAGTCAACTAATTTAGATTATGAGACGACTGCAAGCACAATAAA

Function

symbol description
n4bp1 Predicted to enable mRNA binding activity; ribonuclease activity; and ubiquitin binding activity. Predicted to be involved in negative regulation of macromolecule metabolic process; negative regulation of viral genome replication; and regulation of innate immune response. Predicted to act upstream of or within innate immune response. Predicted to be located in cytosol and nucleolus. Predicted to be active in PML body. Orthologous to human N4BP1 (NEDD4 binding protein 1).

GO:

id name namespace
GO:0016605 PML body cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_05008046_05022184.mRNA True 3124 mRNA 0.51 7 5007872 5022572

Neighbor

gene id symbol gene type direction distance location
CI01000013_04980677_04981525 SIAH1, SIAH1A coding downstream 25724 4979478 ~ 4982148 (-)
CI01000013_04884419_04897842 ST3GAL2 coding downstream 110030 4883297 ~ 4897842 (-)
CI01000013_04843421_04845524 NA coding downstream 162348 4843010 ~ 4845524 (-)
CI01000013_04824249_04836061 ARIH1 coding downstream 171811 4823906 ~ 4836061 (-)
CI01000013_04781357_04784880 HACD3 coding downstream 222992 4781164 ~ 4784880 (-)
CI01000013_05168475_05174273 CBLN1.S, CBLN1 coding upstream 145033 5167605 ~ 5174273 (-)
CI01000013_05197841_05231302 TMEM189 coding upstream 174784 5197356 ~ 5231568 (-)
CI01000013_05233187_05234747 NA coding upstream 210500 5233072 ~ 5234840 (-)
CI01000013_05255572_05261556 ZNF423 coding upstream 232818 5255390 ~ 5261609 (-)
CI01000013_05318806_05354911 ZNF423 coding upstream 296234 5318806 ~ 5354911 (-)
G81047 NA non-coding downstream 75613 4928832 ~ 4932259 (-)
G81079 NA non-coding downstream 142601 4861746 ~ 4865271 (-)
G81081 NA non-coding downstream 146976 4852700 ~ 4860896 (-)
G81078 NA non-coding downstream 208402 4799204 ~ 4799470 (-)
G81077 NA non-coding downstream 209951 4797565 ~ 4797921 (-)
G81098 NA non-coding upstream 2932 5025504 ~ 5025931 (-)
G81108 NA non-coding upstream 14305 5036877 ~ 5037092 (-)
G81109 NA non-coding upstream 14604 5037176 ~ 5037478 (-)
G81112 NA non-coding upstream 17484 5040056 ~ 5040289 (-)
G81121 NA non-coding upstream 32781 5055353 ~ 5055738 (-)
G81032 NA other downstream 257311 4748809 ~ 4750561 (-)
CI01000013_04561253_04567647 MAP2K1 other downstream 448969 4560340 ~ 4567647 (-)
G80443 NA other downstream 941855 4064942 ~ 4066017 (-)
G80399 NA other downstream 1101632 3904067 ~ 3906240 (-)
G80271 NA other downstream 1284265 3719433 ~ 3723607 (-)
G81547 NA other upstream 716954 5739526 ~ 5744038 (-)
CI01000013_05883498_05884071 CHTF8 other upstream 859477 5882049 ~ 5884071 (-)
CI01000013_07339918_07367774 NA other upstream 2317137 7339709 ~ 7367774 (-)
CI01000013_09309438_09335834 MICAL3A other upstream 4284464 9307036 ~ 9336077 (-)
G85170 NA other upstream 5457289 10479861 ~ 10480700 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012736 n4bp1 coding NC_007129.7 CM002902.2 18405992 ~ 18422543 (+)