CI01000013_05197841_05231302 (TMEM189)


Basic Information

Item Value
gene id CI01000013_05197841_05231302
gene name TMEM189
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5197356 ~ 5231568 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_05197841_05231302.mRNA
AATATTTGTCAATCATTTATCTCATGAGATGAAACAAGGTAAATAATTCTTATTATAATATGTCTGTTTATTATAGCGAAGTATCAGACAGGCAGTTCGTGCGTATTTTAGTTCCGGGTGTGTTTCTCTTAAGTAGGAACCTCAGTTTACCAGAAAAGGTGTGTCATTCACCGCTAAACCCAAACCCATGTGTGTTAGTTACTAAATGCACGATACAACGTCATTATTAATGCAAGTTTTCTGAAAACTGGCCATCAGAAGGGAGCATGGCTGCAGCGTTACTGTCGGAGACGGAGATCAGGCACCGGTCTATGGCAGAGGAGGATCCGAACGGGAATGAACATGGGGCGGCTGCGCGCAGCGCCTTGCCTCGCTGGGGACCGCAGCATGCCGGGGCCCGGCAGCTCGCTAAGCTTTACTCTCCGGATGCCCTTGGCATTGTTGGGGGGGAGGTGAAGTGGGGTAGAGAATGGCTCAGTCATGGCATGTTGGCAGGACTTTGTGGCGTGGCTGGCCCTATGAAAGGCTGCTATTCTGAGACTGTGAGTTGCTTTTTGTCTGCCTCTCCGGAGGAGGACGGCTCCTCTAATGGCATTAAATTTTCAAAAGAGCTGAGTCCACTGCGCCTCTCCATGCCCACATCCGCCCAACAGGAGAGCGAAGGAGAGAGCGATGGAATGAGAAGAAAGAGCCGCAGAAAGCGGCTGCAGGAGTGGATCTCTGTGATTCTGTGCCTCTCACTCTTCATTGTAAACCTCTCCTTCCTCCTCCTCAACTTCTCCACAGTGCACATCTACAAAATCATCTTTGGCATCGTGACTGGTATTGTGACAGCAGACTTTGCATCTGGGATGGTACATTGGGGAGCTGATACATGGGGTTCGGTGGACATCCCAATAATTGGAAAGGCATTTATTCGCCCGTTCCGGGAGCACCACATTGATCCGACGGCTATCACACGGCATGACTTCATAGAGACTAATGGAGACAACTGCATGATCACCATCCTGCCTCTGGCCCACATGGCCTATAAATTCCTCTCTTACCCACCAGATGCCCTTGCAGAGTCCTACCCCTGGGAATGTTTTGTTTTTGCGTTGGCAGTCTTTGTAACCATGACTAATCAGATCCACAAGTGGTCCCACTCCTACTTTGGCCTGCCACGCTGGGTCACACTACTGCAGGACTGCCACCTAGTGCTGCCACGGAAGCACCACCGGATCCATCATGTGTCGCCACATGAGACGTACTACTGCATCACTACAGTTTTACTTCCATTTCAAAGGTGGTTGAACTACCCGCTGGACAGAGTGGGTTTTTGGCGGACAATGGAGTGGTTGATCGAGAGATTGACGGGTCAGAAGCCACGCAGTGATGACATGGCCTGGGCCAAGAAAACCGGGTGACCAGGATAACAGGACTGTACCCCTCCCCTGTTGAGGGGAAGCAGAAACCGAATATGGGCCTTACCTCTATACCCCAGAAACACTCTCCCATTATGTTGCTGTGTCCCTCCATCTCCCCTAAACCTTTTTCTCCACAGCACAGTATCACAGATCCCTCTTTATGTGGAGGCCTTTTCCTGTCACTGAGGTCTGCTACACACAAGCCATCACCTGTTCTGTTTTGTAGATGTCCACACAAAGAAATAGTAGAAAGACAAGAAGAAGTTCAAAACGGTGACTGTTGAGAAAATGATGAGAGACACTGTTCCTCTCACAATCCTTTGCTTCATCTCCATGTGCAGACAGGCACCACTGCTTTCTCGTTTCGGTGTGTAAAATGTATGTTTTCTGGAGGTTGGGCTCTCCAGAGGACCGAAACCATGTTGTGATTTCCCCAGCATGGTTTTCATAGCAGTGCATGCCATGGAGTGAGAGAAGCAATTAAA

Function

symbol description
tmem189 Enables plasmanylethanolamine desaturase activity. Involved in ether lipid biosynthetic process. Located in endoplasmic reticulum membrane. Orthologous to several human genes including PEDS1-UBE2V1 (PEDS1-UBE2V1 readthrough).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K20656 TMEM189; plasmanylethanolamine desaturase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_05197841_05231302.mRNA True 1891 mRNA 0.49 9 5197356 5231568

Neighbor

gene id symbol gene type direction distance location
CI01000013_05168475_05174273 CBLN1.S, CBLN1 coding downstream 23083 5167605 ~ 5174273 (-)
CI01000013_05008046_05022184 N4BP1 coding downstream 174784 5007872 ~ 5022572 (-)
CI01000013_04980677_04981525 SIAH1, SIAH1A coding downstream 215208 4979478 ~ 4982148 (-)
CI01000013_04884419_04897842 ST3GAL2 coding downstream 299514 4883297 ~ 4897842 (-)
CI01000013_04843421_04845524 NA coding downstream 351832 4843010 ~ 4845524 (-)
CI01000013_05233187_05234747 NA coding upstream 1504 5233072 ~ 5234840 (-)
CI01000013_05255572_05261556 ZNF423 coding upstream 23822 5255390 ~ 5261609 (-)
CI01000013_05318806_05354911 ZNF423 coding upstream 87238 5318806 ~ 5354911 (-)
CI01000013_05364044_05374057 NA coding upstream 131545 5363113 ~ 5374415 (-)
CI01000013_05411710_05415878 NA coding upstream 179930 5411498 ~ 5415878 (-)
G81507 NA non-coding downstream 19282 5177767 ~ 5178074 (-)
G81498 NA non-coding downstream 41060 5156087 ~ 5156296 (-)
G81463 NA non-coding downstream 47030 5149942 ~ 5150326 (-)
G81494 NA non-coding downstream 47692 5149361 ~ 5149664 (-)
G81472 NA non-coding downstream 75282 5121792 ~ 5122074 (-)
CI01000013_05561156_05569165 NUP93 non-coding upstream 336963 5561070 ~ 5569165 (-)
G81539 NA non-coding upstream 351028 5582596 ~ 5583268 (-)
G81540 NA non-coding upstream 353433 5585001 ~ 5585201 (-)
G81543 NA non-coding upstream 375589 5607157 ~ 5609589 (-)
G81545 NA non-coding upstream 379293 5610861 ~ 5611159 (-)
G81032 NA other downstream 446795 4748809 ~ 4750561 (-)
CI01000013_04561253_04567647 MAP2K1 other downstream 638453 4560340 ~ 4567647 (-)
G80443 NA other downstream 1131339 4064942 ~ 4066017 (-)
G80399 NA other downstream 1291116 3904067 ~ 3906240 (-)
G80271 NA other downstream 1473749 3719433 ~ 3723607 (-)
G81547 NA other upstream 507958 5739526 ~ 5744038 (-)
CI01000013_05883498_05884071 CHTF8 other upstream 650481 5882049 ~ 5884071 (-)
CI01000013_07339918_07367774 NA other upstream 2108141 7339709 ~ 7367774 (-)
CI01000013_09309438_09335834 MICAL3A other upstream 4075468 9307036 ~ 9336077 (-)
G85170 NA other upstream 5248293 10479861 ~ 10480700 (-)

Expression


Co-expression Network