CI01000013_04980677_04981525 (SIAH1, SIAH1A)


Basic Information

Item Value
gene id CI01000013_04980677_04981525
gene name SIAH1, SIAH1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4979478 ~ 4982148 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_04980677_04981525.mRNA
ACACCATTCCTTTTGTCATGAATCTGGAAAGAATACATCCCAAGTCCTATACTTCTCTCCACAGGTCATCCCATACACATTCACACTTCTCAGTGCAGCTTGTTGCCATAGGAACACTCTTGCAGCAGACATGCGCTCTGGCCTTCTGAGTCCACTCTCCATGTCTGGCTTTAAAAAAAAAAAAAAAAAAATAGCGAGGCGTGAAGATCTGTGCATTTTATTAATGCCAGAAATAGCTGCCCTGAGTCTTCCCCTGAGGCCCTTGTCTGACTTATCGGTGGCACTAGATGGCTATATCTCTGAGCCACTCGGGGAGAACAGGCATTTCCTGGCTCATACCACTGTTGAGACTTTTTCATCACTCTATTTGGATTTCATACTGGTTGAATCAGCAGAAATGTGTACATTTTACCCTGAGGCTACATTCTGAAATGTCTACTTTATGTTCAGGAAGCAGAAGTGCTCAGATCAGTGCATTAGATGCCAGCTGATCTCTGCAGTCATGCATAATGCAGTTGCTTAGCTGGTCTTGGATGTTTCTTGTAAATGCTTGCACCTCCATTTCTTTGTGGTTGTCTGTTTGCTAAGCTAACTCTTTTCTTTATCTCCTTTTTTTTTTAGAAATGAGTCGCCAGACTGCCACAGCGCTGCCCACAGGAACCTCTAAGTGTCCCCCTTCTCAGCGCGTCCCAAACTTGTCGGGCACCACCGCATCCAACAGTGACCTCGCCAGCCTGTTTGAGTGCCCGGTTTGTTTTGACTATGTGCTGCCGCCCATCCTGCAGTGCCAGAGCGGGCATTTGGTTTGTAGCAACTGCCGGCCCAAACTCACCTGCTGCCCTACCTGCAGAGGCCCACTTGGGTCAATTCGCAATTTGGCCATGGAGAAAGTGGCCAACTCGGTGCTTTTCCCTTGCAAGTACGCCTCATCAGGCTGCGAAGTTACCCTTCCGCACACAGACAAGGCTGAACACGAGGAGCTTTGTGAATTCCGGCCATACTCTTGCCCCTGTCCTGGCGCCTCCTGCAAGTGGCAGGGATCTCTCGATGCCGTCATGCCTCACTTGCTGCACCAGCACAAGTCCATAACCACGCTACAAGGTGAGGATATTGTCTTCCTGGCCACAGACATCAACTTGCCTGGGGCAGTGGACTGGGTCATGATGCAGTCGTGCTTCGGCTTCCATTTTATGCTCGTGTTAGAGAAGCAGGAGAAATACGACGGCCACCAGCAGTTCTTTGCCATCGTGCAGCTGATCGGCACACGAAAACAGGCGGAAAACTTCGCCTACCGGCTGGAGTTAAATGGCCATCGGCGGCGGCTCACCTGGGAGGCGACGCCACGTTCCATCCATGAGGGCATTGCCACCGCCATCATGAACAGTGACTGCCTGGTGTTTGACACCTCCATTGCTCAGCTGTTTGCGGAGAATGGCAACCTGGGCATCAATGTCACCATATCCATGTGCTGAGGACTAACAGCTGTGCATACTTGAACACATACACACATGAAACCAGACATTTCAGAACACCGCAGGATACCTTGAGTTGTGCTTGGGGGACGGGGGAGTAGCTATCCTAGGGAACTTTTTGCTGTTGTACGTTCCAAGTAGTCATAAAAAAAAACTGTTATTGGTTGGAGCTTGGCACGTCCGACCAGACTTTACTCCTGGGTTCTCAGTTTTATGCTACAATATTATATAAATTAAATAATTAATGTATTCTACATTTTTGAGAGCAACATTCATTGCCCTTGAAGGTATAGGAAAGCCACGTTTGTGGAATGGACATTTGCAAATGTGGCACTTGGAACAAGGGTTTGAGGAACAGCACGCCGAGCTGGATGGCGGTTGGGAATACTGATCAATTCTGAGGTGGGTTTGCTCAAAAGGTGCAACCCTTAGAGCAATTTTTTTTCATCCTGTTTTGTTTCCCAAGAAGTTTTACATTTCAGTTCAGATGAAACACTAACGTTTGTTAAAATATTAGGTTTTGTTTTGTGTCTTCCCCACCCCAAGTTAAGATTTCATTTTAGAGTTCTTGTTTGTTTCTGCCTATCACTGCAGTGTTTCTCCTGTTTGTTTTTGAAGGGATAGTTTCATAACTTGGCACATGCACATCAAGCCAGGTTGTAAAAATAGTCAAGTTTCTGTCTCAATGCCACACTTCTTTTTTTTTTTTTTTTTTTTTTTTTAAATATCAAACTCTTAACAGCTTGATTCAAGTTGTGCAGTGTATGCATGAGATCTTAAGTTTTGTTGCCTGAGATGGAAGCCCTCCATTACAAACAGTGGAGTAAACACTGCACTGAATATCAGGCTAGGAACGGGGGCAATTAATACAGTTATTATAATGAGATTATTGTCATAATTATCATTTTGTAATGACTTATAAGAAAATGGAATGAAAAAGGCTGTTGTAACCTTGTGGCTAATCTTCAGTGTTTGTAGATAGTGTTGTTCTTCAGAAGACCTCAATGTCTTCTTTTTCTCTTTTTGTAAGTCAATAATTTTGTTGCTGTTGTTCTTTGTATGTCTGTATTTCTGTTTTTTGCAAGGATAGGGTGAAGCAAAGCCAAACATCTCTGTGGATACATTGTACTGTTGCTAGTCCTGATCTCTAATTTTATTTGTTTTATTGTTTGTTTTGTTCTATTTTGCCAGTAAATAAA

Function

symbol description
siah1 Predicted to enable ubiquitin conjugating enzyme binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Predicted to be involved in neuron apoptotic process and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be active in cytoplasm. Is expressed in germ ring; myotome; and nervous system. Orthologous to human SIAH1 (siah E3 ubiquitin protein ligase 1).
siah1a Enables several functions, including disordered domain specific binding activity; protein homodimerization activity; and zinc ion binding activity. Involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Acts upstream of or within male gamete generation; post-embryonic development; and regulation of growth. Part of SCF ubiquitin ligase complex. Is expressed in several structures, including alimentary system; early embryo; gonad; hemolymphoid system gland; and liver. Orthologous to human SIAH1 (siah E3 ubiquitin protein ligase 1).

GO:

id name namespace
GO:0008766 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity molecular_function

KEGG:

id description
K04506 SIAH1; E3 ubiquitin-protein ligase SIAH1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_04980677_04981525.mRNA True 2671 mRNA 0.44 1 4979478 4982148

Neighbor

gene id symbol gene type direction distance location
CI01000013_04884419_04897842 ST3GAL2 coding downstream 81636 4883297 ~ 4897842 (-)
CI01000013_04843421_04845524 NA coding downstream 133954 4843010 ~ 4845524 (-)
CI01000013_04824249_04836061 ARIH1 coding downstream 143417 4823906 ~ 4836061 (-)
CI01000013_04781357_04784880 HACD3 coding downstream 194598 4781164 ~ 4784880 (-)
CI01000013_04760408_04771970 SLC24A1 coding downstream 206689 4760392 ~ 4772789 (-)
CI01000013_05008046_05022184 N4BP1 coding upstream 25724 5007872 ~ 5022572 (-)
CI01000013_05168475_05174273 CBLN1.S, CBLN1 coding upstream 185457 5167605 ~ 5174273 (-)
CI01000013_05197841_05231302 TMEM189 coding upstream 215208 5197356 ~ 5231568 (-)
CI01000013_05233187_05234747 NA coding upstream 250924 5233072 ~ 5234840 (-)
CI01000013_05255572_05261556 ZNF423 coding upstream 273242 5255390 ~ 5261609 (-)
G81047 NA non-coding downstream 47219 4928832 ~ 4932259 (-)
G81079 NA non-coding downstream 114207 4861746 ~ 4865271 (-)
G81081 NA non-coding downstream 118582 4852700 ~ 4860896 (-)
G81078 NA non-coding downstream 180008 4799204 ~ 4799470 (-)
G81077 NA non-coding downstream 181557 4797565 ~ 4797921 (-)
G81098 NA non-coding upstream 43356 5025504 ~ 5025931 (-)
G81108 NA non-coding upstream 54729 5036877 ~ 5037092 (-)
G81109 NA non-coding upstream 55028 5037176 ~ 5037478 (-)
G81112 NA non-coding upstream 57908 5040056 ~ 5040289 (-)
G81121 NA non-coding upstream 73205 5055353 ~ 5055738 (-)
G81032 NA other downstream 228917 4748809 ~ 4750561 (-)
CI01000013_04561253_04567647 MAP2K1 other downstream 420575 4560340 ~ 4567647 (-)
G80443 NA other downstream 913461 4064942 ~ 4066017 (-)
G80399 NA other downstream 1073238 3904067 ~ 3906240 (-)
G80271 NA other downstream 1255871 3719433 ~ 3723607 (-)
G81547 NA other upstream 757378 5739526 ~ 5744038 (-)
CI01000013_05883498_05884071 CHTF8 other upstream 899901 5882049 ~ 5884071 (-)
CI01000013_07339918_07367774 NA other upstream 2357561 7339709 ~ 7367774 (-)
CI01000013_09309438_09335834 MICAL3A other upstream 4324888 9307036 ~ 9336077 (-)
G85170 NA other upstream 5497713 10479861 ~ 10480700 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020326 siah1,LOC106573709 coding CM030127.1 CM030127.1 16450836 ~ 16452635 (+)
mexican tetra (Astyanax mexicanus) G158914 NA non-coding NC_035914.1 CM008317.1 16567033 ~ 16571462 (-)