CI01000013_05793138_05803928 (TRHR2)


Basic Information

Item Value
gene id CI01000013_05793138_05803928
gene name TRHR2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5790763 ~ 5804176 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_05793138_05803928.mRNA
ACTGAAGAAATAATGGGTTGCAGTCAGCAGAGGAACATCATTATGTGTTTGAAGCCAAGAAAATTAAACAAGATACTTAATAAGAGAAAAGACCATCAATAAAAGCTGGAACTGAACAGATAGTTTTTATACCTTCTTTAATGTTTTGAACAACACACAGATTCTATTCTGCTTTCTTAATCCTCCACCAATTTGATTTCTGACTGTTCCTTCTCATCCTGTATGTATTTACATCAAGAGGACTAATCATGCCAGAAAATGTGAGCTCCAGAATGGACACTCCCACCAACATCTCCCTGGTGGGGCCTGGGGACCCTGTGTCTGAGTCCCTGGAGTATAAGACCGTATCTGTGTTCCTGGTGCTGCTGGTGTGTGGTGTGGGAATAGTGGGAAACATCATGGTTGTGATGGTGGTTCTTACCACACGCCACATGCGTACACCCACCAACTGCTATCTGGTGAGCCTTGCGGTGGCGGACCTGATGGTTCTGGTGGCCGCGGGTCTGCCAAACATCTCTGAGAGCCTGATGGCTACCTGGGTGTACGGGCATGCTGGGTGCCTGGGCATCACTTACTTCCAGTACCTTGGCATTAACGTGTCCTCCTGTTCAATCACAGCTTTCACTGTGGAGAGATACATCGCCATATGTCACCCAATGAGGGCACAAACTGTCTGTACGGTTTCCCGAGCCAAACGCATCATTGCTGGGGTGTGGGTTTTCACCTGTGTCTACTGTATGCTCTGGCTCTTTCTGGTGGACATCCAGGTGAACCCTGACGGTCGTGTTCAGTGCGGCTACCGCGTCTCTCGAGACCTCTATCTGCCCATTTACCTTATCGATTTCGCCATCTTCTACGTTATCCCGCTACTTCTGGCCATCGCTCTTTATGGTCTCATAGCCCGAATCCTTTACCTGAATCCTCTGCCCCACCCACCAGATTCGGGCACCATAACCGCCCCCACTCTCAGGAGGAGCTGCAAAGAACCAGCGGACGCCGGAAAAGGAGGTCGTCAGGGACGGCCAAAGAGCGCGCTTTCTTCCCGGAAACAGGTCACAAAGATGCTGGCAGTGGTGGTTGTGCTCTTCGCCCTGCTGTGGATGCCGTACAGGACCCTGGTTCTCATTAACTCCTTTGTGAGCACGCCATACCTGGACGCCTGGTTCCTGCTCTTCTGCAGGACCTGCATTTACGCCAACAGTGCAATCAACCCTGTCGTTTACAACCTGATGTCCCAGAAGTTTCGCTCGGCCTTCCGTGGGCTGTACCGCTGCCATAGGGAAGACTTGCACCAGCGGACACTCTCCATGCTCCAGAGCGGATACAGCCTAGGAAGAGACCCCCGACTTTGCAGCAACACCAACGGCACCAGAGACACACCTAAGAAAATTGGTTCAGTCACTCCTGAGCAGAAACAAAACAAAGGCATGGAGAACAAGAAAAATATGGACAAGCTAATTAGCGATGGCGTAAAAAATGAGATTGATCCAGGCATCAACAAAAATGCAGTTGAAAACTGCAACATAGATGAATTGAAAACCTCAGTAGACAAGGAGATGCCTACAGTGGAGAACGTGGACATGAGCAAGATTAATGATAATGGGAAAATAATGGAGGAAAGCGCTAATACTACTCAGGATATTATCGCTGACATGAGCAACACAGAGCAGACACAGCTAGCCTGCGGTGAATTCAAATCCACTCTGGGGGAAGCTAGACAGAATGACACAGAGCTAAATCACAGCATTGTATAGATCAGTATACTATATTTAAACAGTTTCAAGAAAAAGTATGTGAACCACTTGCAGAATCTGTGAAAATGTGAATAATTTTAACAAAATAAGAGAGATCATATAAAATGCATGTTATTTTTTATTTAGTACTGTCCTGAGTTAGATATTTTACATAAAAGATGTTTAAATATAATCCACAATACAAAAAAAAAAAAGCTGAATTTATTAAAATGACCCAGTTCAAAAGTTTGTGAACCATTGATTCTTAATACTGTGTGTGGTTACCTGGATGATCTACAACTGTTTTTTTTGTTTTGTGATGGTTGTTCATGAGTCCCTTGTTTGTTTTGAGCAATTAAACTGGCCAGTGTTCTTCAGAAAAATCCTCCAGGTCCTGCAAATTCTTCAGTTTTCAAGCATTTTTTGCATATTTGAACCCTTTCCAGCAGTGACTGAATGATTTTGAGATCCATCTTTTCACACTGAGGACAATTGAGGGACTCAAACACAACTATTAAAAAATGTACAAACATTCACTGATACACCAGAAGGAAACACGATGCATTAAGCAAAACTTTTTGAATTTGAAGATTAAGGTAAATTGTACTTAGTTTGTCTTCCGGGAAACATGCAAGTATCTTCTGTTGCTTCCGAAGGGCAGTACTTAATGAAAAATAAAATGATATTTAAACTAAATAAGAACAATTTGGACATCTTTATTCTGTTCAAAAGTTTTCACCCCCCGTCTCTTAATGAATCATGTTTCCTTCTGGAGCATCAGTGAATGTTTGAACCTTTTTTAATAGTTGTGTTTGAGTCCCTCAGTCGTCCTCCATGTGAAAAGATGGATCTCAAAATCATACAGTCACTGCTGGAAAGGGTTCAAATATGCACAAAAAAAAAAAAAAAATGCTGGAAAACTGAAGAATCTGCAGGACTTGGAGGATTTTTCTGAAGAACAGAGCTCAGTTTAACTGCTCAGGACAAACAAGGGACTCATGAACAACCATCAAACAACAAAAAAACAGTCGTAGATCATCCAGGTAACCACACACAGTATTAAGAATCAATGGTTCACAAACTTTTGAACGGGGTCATTTTAATAAATTCAGCTATTTTTTTGTCTTGTGGACTATATGTAAACATCTTTTATGTAAAATATCTTACTCAGGACAGTACTAAATAAAAAATAACATGCATTTTGTATGATCTCTCTTATTTTGTTAAAATTATTCACATTTTCACAGATTCTGCAAGTGGTTCATGCAACTGTACATTTCATTGAAGTGGCAGGGTTGATCAGTGGAGTCTGGTTGTTCATTTTAAAACCAGATCTTGAAATTGGGACCTTGTTTGTATGTACTAAAAGGCGTCATTCTTTCTCTCAAGTGGAGGTGGCAAGACTGTAGCCACTCTCTCCTCATAATTTACAAGTGAAACCATTTGGCTGTCAGATCCAGCATCACATGCCTCCTAGTGCTAGAGCTCCAGCTAGGGCTACTTGATATAAAAAAAATCATATTGTGATTATTTTGACAAAACATTTAACTATTATTTTGATATCATATTGCTGCTGCTTAGAAATGTATAATTACATAGAAACAGCACCCGTCAAAAATAAA
>TU94109
AAAACAGTCGTAGATCATCCAGGTAACCACACACAGTATTAAGAATCAATGGTTCACAAACTTTTGAACGGGGTCATTTTAATAAATTCAGCTATTTTTTTGTCTTGTGGACTATATGTAAACATCTTTTATGTAAAATATCTTACTCAGGACAGTACTAAATAAAAAATAACATGCATTTTGTATGATCTCTCTTATTTTGTTAAAATTATTCACATTTTCACAGATTCTGCAAGTGGTTCATGCAACTGTACATTTCATTGAAGTGGCAGGGTTGATCAGTGGAGTCTGGTTGTTCATTTTAAAACCAGATCTTGAAATTGGGACCTTGTTTGTATGTACTAAAAGGCGTCATTCTTTCTCTCAAGTGGAGGTGGCAAGACTGTAGCCACTCTCTCCTCATAATTTACAAGTGAAACCATTTGGCTGTCAGATCCAGCATCACATGCCTCCTAGTGCTAGAGCTCCAGCTAGGGCTACTTGATATAAAAAAAATCATATTGTGATTATTTTGACAAAACATTTAACTATTATTTTGATATCATATTGCTGCTGCTTAGAAATGTATAATTACATAGAAACAGCACCCGTCAAAAATAAAAGGCTGGAATGTGCTACACGACTTTTAAAATCTGAACAGATTTTTAAACACTATGCATCATACACTTGCTGTCTTTGTAAATGGTTACAGTGGAAAACCTGACCATCAAACACTAAACAACTGAGGATCACACACTACCAGACTTGTGGAAACATGTGCCTCATTGCTAGGAGACATGTGACAGATGAAAACAATATGTGCTCTATCTTCCGATAGACTGGATAGAATCATAATCTGAAGCTAAAAAAAATCATAGTCTGAGCCTATCATATACTAAGTGATTTTATGTGAAATCTGAGATATCAAACTGCCCAAAATCTGCAGACTGGCTATATCTTTCAACAAGCTTGAACTCTTCTATACGGCAAATCAGGGCAAAAATATGGGCAAAAGTTGTGTAGTGTATTCCAGCCTTGAACTGTTGCTCCTAGAAAGCAATGAGCTTATAGTAAATGCAAATTAAAATTGGGAGTTTTGATTAAAGGGATAGTTTACTCAATAATGAAAATTATTTACTCACCCTCATGTTGTTCCAAACCACGTTCTTACTTATGTGGAACACAAAAGAAGATATTTTGAAGAATGTTTTATTCAGTTTTAGTTCATACAATGAAAGTCAATGTGGTCCAGAACAACAAATTTCATAGTATAGACTAAAAACAAACAAAATTCATCTTATCTATTTTCTGACTGCATCTTATTGAGAACAATTACTCTATGGATGTTTTTATGAAAGTGCTGAATTTCGACCCTCTGCCAAATTATTACCCCCCT

Function

symbol description
trhr2 Predicted to enable thyrotropin-releasing hormone receptor activity. Predicted to be involved in phospholipase C-activating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

NR:

description
thyrotropin-releasing hormone receptor 2

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04282 TRHR; thyrotropin-releasing hormone receptor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_05793138_05803928.mRNA False 3355 mRNA 0.42 3 5791537 5804176
TU94109 True 1375 lncRNA 0.34 1 5790763 5792137

Neighbor

gene id symbol gene type direction distance location
CI01000013_05688638_05691660 NA coding downstream 99609 5688583 ~ 5691928 (-)
CI01000013_05652235_05656208 NA coding downstream 135080 5652118 ~ 5656457 (-)
CI01000013_05638498_05647534 NA coding downstream 144003 5638478 ~ 5647534 (-)
CI01000013_05626666_05631514 NA coding downstream 159891 5626113 ~ 5631646 (-)
CI01000013_05592121_05601330 CUNH16ORF70, CLG7H16ORF70, C11H16ORF70, C4H16ORF70, C2H16ORF70, C14H16ORF70, C5H16ORF70, C16H16ORF70, C18H16ORF70, CE2H16ORF70, CLG19H16ORF70, C20H16ORF70 coding downstream 190207 5592121 ~ 5601330 (-)
CI01000013_05883498_05884071 CHTF8 coding upstream 78681 5882049 ~ 5884071 (-)
CI01000013_05905378_05906438 NA coding upstream 101068 5905244 ~ 5907255 (-)
CI01000013_05911902_05917100 NA coding upstream 107285 5911461 ~ 5917579 (-)
CI01000013_05928871_05930892 NA coding upstream 124547 5928723 ~ 5930892 (-)
CI01000013_06061522_06065866 NA coding upstream 256275 6060451 ~ 6065927 (-)
G81622 NA non-coding downstream 16358 5774974 ~ 5775179 (-)
G81620 NA non-coding downstream 20551 5770769 ~ 5770986 (-)
G81610 NA non-coding downstream 28840 5762465 ~ 5762697 (-)
G81605 NA non-coding downstream 37055 5754269 ~ 5754482 (-)
G81547 NA non-coding downstream 47499 5739526 ~ 5744038 (-)
G82728 NA non-coding upstream 15378 5819554 ~ 5837068 (-)
G82763 NA non-coding upstream 80805 5884981 ~ 5885204 (-)
G82765 NA non-coding upstream 96663 5900839 ~ 5901055 (-)
G82768 NA non-coding upstream 104080 5908256 ~ 5908611 (-)
G82783 NA non-coding upstream 132561 5936737 ~ 5942361 (-)
G81032 NA other downstream 1040976 4748809 ~ 4750561 (-)
CI01000013_04561253_04567647 MAP2K1 other downstream 1232634 4560340 ~ 4567647 (-)
G80443 NA other downstream 1725520 4064942 ~ 4066017 (-)
G80399 NA other downstream 1885297 3904067 ~ 3906240 (-)
CI01000013_07339918_07367774 NA other upstream 1535533 7339709 ~ 7367774 (-)
CI01000013_09309438_09335834 MICAL3A other upstream 3502860 9307036 ~ 9336077 (-)
G85170 NA other upstream 4675685 10479861 ~ 10480700 (-)
CI01000013_10564288_10569141 NA other upstream 4759283 10563459 ~ 10569290 (-)

Expression


Co-expression Network