CI01000013_06067565_06070941


Basic Information

Item Value
gene id CI01000013_06067565_06070941
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 6066884 ~ 6071892 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU94173
GTCATCATCTCGCGTCAAGCTTTTCTTGTTATCATCCTACTTGTCATCTCGAATATTTGCCTGAAACAAATTTCAGCAGGGCCTCCAGCAGTGAATGAGGTCTAGAGTTGTTACAGAGCAGCCCTCCATCTGGAGCCAAGATGGGCCAACAGCTTTCTGGCCAGGCAATGGCCAGACTGCCTGAGAAACTGATCAAACATGTGGGGCTAGTGCGGGACGGTGGCTACCTCACCTATGACGAGTTCTTGGGTCGTGTGGCAGAGCTTAATGATGTAACTGCTAAACTAGCCTCTGGTCAAAAGAAACATCTTTTGTTTGAAGTGCAGCCTGGATCAGATGCAACTGCTTTATGGAAAGTTGCTGTGAGAATAGTGTGCACCAA
>TU94174
GCTAAATAAGAATAATGCGTAGCCTACTCTTTAAATTCTTTAGTTGTACTTGCTTGTCTGTATAAAAATTAGATGGATTTTTACCGTTGAGTCCCGTCGTGACGTCATCATCTCGCGTCAAGCTTTTCTTGTTATCATCCTACTTGTCATCTCGAATATTTGCCTGAAACAAATTTCAGCAGGGCCTCCAGCAGTGAATGAGGTCTAGAGTTGTTACAGAGCAGCCCTCCATCTGGAGCCAAGATGGGCCAACAGCTTTCTGGCCAGGCAATGGCCAGACTGCCTGAGAAACTGATCAAACATGTGGGGCTAGTGCGGGACGGTGGCTACCTCACCTATGACGAGTTCTTGGGTCGTGTGGCAGAGCTTAATGATGTAACTGCTAAACTAGCCTCTGGTCAAAAGAAACATCTTTTGTTTGAAGTGCAGCCTGGATCAGATGCAACTGCTTTATGGAAAGTTGCTGTGAGAATAGTGTGCACCAA
>CI01000013_06067565_06070941.mRNA
AAATGTCAAAAGAATAATATTGAAAGTCAAAGTCAAAACCTTTTGTCATGTTTTATTTCCTGTGCTTTCTGCACAGTCAGGGAAAGCTGTTTTTATGTTCTTACTCAGGAATTTAGAGATGAAATCATAAATGATGTGAATCTGCAAAATGGCACAGGATGCTTTGAATAACTTCCTGTCATTTTGTACATCTCCCCTGTGGGTTCATTCAGAGGAGAGGGTTTCTATGTTTTTCTGTTAGGTCTTCTCTATAGACTAACATAGCCTGTAATTCACTGTTCTTGCAATAGCATGTCAGGCTGGTTGTTTTGAAAGCGACGTGGTAATGAGCTTTTCTGTTTATTTAGCCTTCATAATCACAGACAACACTGGAAAGAATTACCTGAAGAAGGAAGCAGGCCTATCTCGGCTATCACTGATGCTACACATTAGGGGAGACATTGAGAGGAAATATTTTCATTTGGATGAAAACAAAAAAACAAAAACATCACGGACATCAAGAAGTTAAGTCAACATCCACAATGAATTTAAACTGAAATAAATTTCTAATAATTATAACAATAATTTATATAATGTATAATGCAGCTTTAAAACATCAAATTAATATTTTATTTAGTTAGTTAGATTCTTAGTACTTAAAGGGATGCCCAATAGGTGCCCGATAGTAAACTTGCTCCAGAGCCCAATATAGCTGCCTGGAAGTTGGATATTTTTCCAACTTGTCCAGAATGTCTATATGCACATGATGTATTGAATGTGTTTAAAGATATGTGACATAACTGGTGCACAACCACAGGAAGTGAACGTTTTTCAGTTGTCCTCTGTCCCAGCTTTAAGTGCCCTCTTTGGGAAGGTCATCTTACAGATCATCCTCAACCTCCTGTTTCCTATTTTTTTGGGTCCCTTTCTGCAGCATCAACAGACTGAGTGTGTTCAAGCTTCTGGGCAGTTATGGTGGCATGTTCTGCAGTCATGGCTAGAGTCTGGTTAGCATTTTGTCAACTGTTCTTCTTATTTACAAGCACACCCTGTCTAGATGTGAGTCAAATTCTAGTGCCTACAAATGATGGAATTTCTGGAGTGTTGTTAGTCCAAGCCAAGAATAACGTGTACAGTTTTAATGCCACCACAGCCAGAGAGGCATGTGAGGCTATTAAAATGAGAATTGCAAATCTAGCTGAAGTGAAGACAGCAAACCAAAATGGCTTACAGACATGCAGGTTTGGTTGGATTGAAGAGCAAATAGCAGTTATTCCTCGAATTGAGAGAAGTGAAAAATGTGGTCGGAACAATTCAGGTGTTATAATTTGGAGAATTAACATCAGCAGAATGTTTGATGTTTATTGTTTTAAACCAGCAGGTCAGCCTGCACTATCCCAGACCACTACACCTAACAAAACATCCCAGCATACTTTAACTTCCACAGGTCAGCCTGCACTGTCCCAGACCACTACACCTAACAGAGCATCCAGAGCGGCAGGTGCAGCTTGGTATCTAAAAATCAAAAGACGACAACGGTTTCCATCTTGGACCAGAATGAGGCCAAAACAGATAACTGAAACAGAGATGTGGAAACAAATAAGTGAGAGGCATTGTGTGCCAGAACAGAACAGCAAAGACAATAACTTTAGAAAATGCAACAACATCATCCTTCAACTGGAACAAGACCCAGACACTCCCTAAGAAAACACTGTAATTTTTTTTTTTTCTGTCACTGTAACTGCATGTAAAAGAGCAGCTTGCACATTATTCTGATGTTCTCCTTTTGTGTTCCACAGAAGAAAGTCCTGCAGATTTGGAAAAACCTTTTCGTTTTTGAGGTGGAATAAACAATGATACTTCATTTATGTTTTTTTTTGTTTGTTTGTTTTGTTTTTTTAAAATAATCTTTTACTTTCAAATATTAAGAACTGATGTAAATAGTTTGTAGTTCATTCTTTGATCATTTTTATCCCATTTAAACACTAATTAACTTAATAGGCTAAATAAGAATAATGCGTAGCCTACTCTTTAAATTCTTTAGTTGTACTTGCTTGTCTGTATAAAAATTAGATGGATTTTTACCGTTGAGTCCCGTCGTGACGTCATCATCTCGCGTCAAGCTTTTCTTGTTATCATCCTACTTGTCATCTCGAATATTTGCCTGAAACAAATTTCAGCAGGTTTGTACACATTTATTTGCATCACGCTGAGTTCTTGTACATTTGTAGCTGATACTAGCGTTTGGTGTATTTGTGTTAAGAGGTTTATGTATTGTTTTGGCCAACCAAGCTAACACTAGTAGCCAGATGATTGTTTTTATAGTAATATTCAATATACAAACACCATCTATATTTAAGCCGCCTTTTCGCATTCCGAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU94173 False 79 lncRNA 0.48 1 6067086 6067164
TU94174 True 182 lncRNA 0.45 1 6067086 6067267
CI01000013_06067565_06070941.mRNA False 2364 mRNA 0.37 6 6066884 6071892

Neighbor

gene id symbol gene type direction distance location
CI01000013_06061522_06065866 NA coding downstream 1018 6060451 ~ 6065927 (-)
CI01000013_05928871_05930892 NA coding downstream 135992 5928723 ~ 5930892 (-)
CI01000013_05911902_05917100 NA coding downstream 149305 5911461 ~ 5917579 (-)
CI01000013_05905378_05906438 NA coding downstream 159629 5905244 ~ 5907255 (-)
CI01000013_05883498_05884071 CHTF8 coding downstream 182813 5882049 ~ 5884071 (-)
CI01000013_06081396_06091061 EIF4G2B, EIF4G2, EIF4G2A coding upstream 9370 6081262 ~ 6091061 (-)
CI01000013_06110808_06115147 NA coding upstream 38872 6110764 ~ 6115181 (-)
CI01000013_06248099_06257023 NA coding upstream 175979 6247871 ~ 6257023 (-)
CI01000013_06301721_06305684 NTS coding upstream 229655 6301547 ~ 6305684 (-)
CI01000013_06357431_06361753 ALX1 coding upstream 285105 6356997 ~ 6361863 (-)
G82782 NA non-coding downstream 9347 6050466 ~ 6057537 (-)
G82777 NA non-coding downstream 24129 6040788 ~ 6042755 (-)
G82811 NA non-coding downstream 68895 5997470 ~ 5997989 (-)
G82783 NA non-coding downstream 124523 5936737 ~ 5942361 (-)
G82768 NA non-coding downstream 158273 5908256 ~ 5908611 (-)
G82838 NA non-coding upstream 71383 6143275 ~ 6143514 (-)
G82888 NA non-coding upstream 214192 6286084 ~ 6286304 (-)
G82889 NA non-coding upstream 214955 6286847 ~ 6287085 (-)
G82893 NA non-coding upstream 227888 6299780 ~ 6300000 (-)
G82920 NA non-coding upstream 259049 6330941 ~ 6331148 (-)
G81547 NA other downstream 322846 5739526 ~ 5744038 (-)
G81032 NA other downstream 1316323 4748809 ~ 4750561 (-)
CI01000013_04561253_04567647 MAP2K1 other downstream 1507981 4560340 ~ 4567647 (-)
G80443 NA other downstream 2000867 4064942 ~ 4066017 (-)
CI01000013_07339918_07367774 NA other upstream 1267817 7339709 ~ 7367774 (-)
CI01000013_09309438_09335834 MICAL3A other upstream 3235144 9307036 ~ 9336077 (-)
G85170 NA other upstream 4407969 10479861 ~ 10480700 (-)
CI01000013_10564288_10569141 NA other upstream 4491567 10563459 ~ 10569290 (-)
G85188 NA other upstream 4520312 10592204 ~ 10595337 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location