CI01000013_06248099_06257023


Basic Information

Item Value
gene id CI01000013_06248099_06257023
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 6247871 ~ 6257023 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_06248099_06257023.mRNA
ATGCTGAATGGCTACAATTATGAGACTGTTAAAATATATGGTCAGTTATCTGGAGCGTGTAAAACAAACTGCGATTGCAGGCGAAAACAAATCTGCCTGTTGTGTAGTGGAGTGCCAGTTTCCAGCGTTCAGCATGTTTATTTATTTATGGGCTTCAAGAAAGAAGGTCTTGGCACAGGGTGGACACTGGGCCACTGCGGTTATCCTCAACGCTCTACCACTGGACGAGGAGGAGAGAGGTCTAACAGCGACCTCCAACATGTCAGGATCCGTTATCACTTCGTGGCACGCAATGCCAACGAGCTCTCTGTGCAGCAGGGTGAGGTGCTGGAGGTACGGATGACCCTCTGTGAGGGGGTGGAGGAGGATGGGGAACAGGGCAGAACAGGTCTGAGGTACAGCGTGTGGGAGGTCTTGGAAAACAATAAACAGTGGCGGCTGCTGCGGAACCGCAGCGGTCAGTCAGGCTATGTGCCGTGTAATGTGCTAGAAGAGGTCAAACCAGGAGAGCAGCAGTACAACCGTGCTGCTCTCTTCAACAGCCAGGCTGTGAATCCTTACAAAGGTACCTCTGCTGGCCCTGTAAATCACACAGAGGTTTTGGAGATGAATAAACCCTCCCGGGATAAAGATAGTACGTACCTCTTATCTGCTTGCTGTATTTGCTGTGAGATGGAGAGTGGGGAGAGTCTGCCAAAAAATAAAAATGCAGAGAATGCTTGTTTCTTTCTCTCTCACTTCTTCACTATCTCTCTAGACCGCAACCAACAGAAAGAGGTAAATGATGAACTGCTGAAGAGGATAACTGACAACAAGGCCCAGCAACCAGCTCGAAACTTTCGGGTGGAGCGCTCAAGTACATCCATGGCCATCACGTATGAATCCCAGCCCTTTGAGGTCCATGCTTGGCTCAGTGCAAAGGGATTCTCCAGACCGGTGGTGGAATGTCTGGGTATTCTGAACGGGGCTCAACTATTTTCTCTCAGTAAGGATGAGCTGAAAGCCGTGTGTGGGGACGAGGGTTCCCGTGTCTTCAGTCAGATCAGTGTGCAGAAAGCTCAATTAGAGAGGGGTCGTGGGGATACAGAGCTACAGGAGATCATGAGGCGACGACAACAGGAGAGCAAATTCCTGGTGCTCTTCTTACCCAGTGTTGTCTATAAAGCCCCCTTTCAGCCCTGTGAAAACCATAAGGCTGAATCTCTAACCGCCTCACTGACTGACAGCTTTGCTACTTGCCCTCACGGGGGGCACATAACAGTGGCTTTGAGTTTGTCTTGTTGCTTTATTTCTGGAATAGATTGTGAACGCATCAGCGAGTATTGTGCTGTGTTCAGGATGAGTGAGAATGACCTCCATCTCTCCCTTTGTATGCACTGTCAAAACGCCTCCCAGTCTTAAGAGAGGGTGGATGTGACTGCGTATTGTCACTATGATTCATGGAATGAATCAATGCCTAATGATGGGATTTACAGAGAGGAACATCAAAGAAAAGACAGAGATTTGCAGTGCAGTCGAACTATTGTTATTCACATTGAGGATATCTACCATTTTTGAGAGAATTTTCTATAGGCTATCTTCTATATGCCAGGGATTGTGGTATCAGGCTGAAGAGATATGAAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_06248099_06257023.mRNA True 1629 mRNA 0.48 8 6247871 6257023

Neighbor

gene id symbol gene type direction distance location
CI01000013_06110808_06115147 NA coding downstream 132690 6110764 ~ 6115181 (-)
CI01000013_06081396_06091061 EIF4G2B, EIF4G2, EIF4G2A coding downstream 156810 6081262 ~ 6091061 (-)
CI01000013_06067565_06070941 NA coding downstream 175979 6066884 ~ 6071892 (-)
CI01000013_06061522_06065866 NA coding downstream 182005 6060451 ~ 6065927 (-)
CI01000013_05928871_05930892 NA coding downstream 316979 5928723 ~ 5930892 (-)
CI01000013_06301721_06305684 NTS coding upstream 44524 6301547 ~ 6305684 (-)
CI01000013_06357431_06361753 ALX1 coding upstream 99974 6356997 ~ 6361863 (-)
CI01000013_06376734_06396189 NA coding upstream 119711 6376734 ~ 6397634 (-)
CI01000013_06425832_06432737 CTSD coding upstream 168809 6425832 ~ 6432737 (-)
CI01000013_06436749_06438533 BHLHE41 coding upstream 178248 6435271 ~ 6439011 (-)
G82838 NA non-coding downstream 104357 6143275 ~ 6143514 (-)
G82782 NA non-coding downstream 190334 6050466 ~ 6057537 (-)
G82777 NA non-coding downstream 205116 6040788 ~ 6042755 (-)
G82811 NA non-coding downstream 249882 5997470 ~ 5997989 (-)
G82888 NA non-coding upstream 29061 6286084 ~ 6286304 (-)
G82889 NA non-coding upstream 29824 6286847 ~ 6287085 (-)
G82893 NA non-coding upstream 42757 6299780 ~ 6300000 (-)
G82920 NA non-coding upstream 73918 6330941 ~ 6331148 (-)
G82911 NA non-coding upstream 191540 6448563 ~ 6449180 (-)
CI01000013_05883498_05884071 CHTF8 other downstream 363499 5882049 ~ 5884071 (-)
G81547 NA other downstream 503833 5739526 ~ 5744038 (-)
G81032 NA other downstream 1497310 4748809 ~ 4750561 (-)
CI01000013_04561253_04567647 MAP2K1 other downstream 1688968 4560340 ~ 4567647 (-)
G80443 NA other downstream 2181854 4064942 ~ 4066017 (-)
CI01000013_07339918_07367774 NA other upstream 1082686 7339709 ~ 7367774 (-)
CI01000013_09309438_09335834 MICAL3A other upstream 3050013 9307036 ~ 9336077 (-)
G85170 NA other upstream 4222838 10479861 ~ 10480700 (-)
CI01000013_10564288_10569141 NA other upstream 4306436 10563459 ~ 10569290 (-)
G85188 NA other upstream 4335181 10592204 ~ 10595337 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012702 eps8b coding NC_007129.7 CM002902.2 16426266 ~ 16442814 (+)