G82811


Basic Information

Item Value
gene id G82811
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5997470 ~ 5997989 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU94210
GAACAAGCCTAAACATGAGCTACTGATTCATTCAGAGACGATTAATTAATTCAACCGAAAAAAAGAAAAAAAACCAGATTAATTTAGGAAGTAAACAGCAAGAAGACGCACAACGGCTGATTCTGCTGTACCCTCGTTTTGAACTGTCCTCGTTGGGAGAGAAAAAATGACAAAGTAGGCTACTGCCAATATTGTGTCTAAAACGTAAGTAACTCACTTTTAACGACTTGCTTACTGGACTGTTGTATGAAGCAATATCATATTTGCAAACTGTGTTTTTGCTATGTAGCTCAGCTAACAAATATATGTTCTAAGAACATTTGCTAACGTTTCCACAAAGACTATAGAATAACACAAGACGTGTCACTCGTATTGTTTTGAATGGGAGAAAGTGTAACGCGCAATATGGCGGAATAAGTCCCGCCTTCAAAATAAGAGCCAATCGCCGACTGGTAAAGTCATCGCGTCACTGCAGCGGCCGTTAGAAGCACCGGTTTCTATAGAAACAGTCAGACGCGCG

Function

NR:

description
PREDICTED: proteasome subunit alpha type-3

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU94210 True 520 lncRNA 0.40 1 5997470 5997989

Neighbor

gene id symbol gene type direction distance location
CI01000013_05928871_05930892 NA coding downstream 66578 5928723 ~ 5930892 (-)
CI01000013_05911902_05917100 NA coding downstream 79891 5911461 ~ 5917579 (-)
CI01000013_05905378_05906438 NA coding downstream 90215 5905244 ~ 5907255 (-)
CI01000013_05883498_05884071 CHTF8 coding downstream 113399 5882049 ~ 5884071 (-)
CI01000013_05793138_05803928 TRHR2 coding downstream 193294 5790763 ~ 5804176 (-)
CI01000013_06061522_06065866 NA coding upstream 62462 6060451 ~ 6065927 (-)
CI01000013_06067565_06070941 NA coding upstream 68895 6066884 ~ 6071892 (-)
CI01000013_06081396_06091061 EIF4G2B, EIF4G2, EIF4G2A coding upstream 83273 6081262 ~ 6091061 (-)
CI01000013_06110808_06115147 NA coding upstream 112775 6110764 ~ 6115181 (-)
CI01000013_06248099_06257023 NA coding upstream 249882 6247871 ~ 6257023 (-)
G82783 NA non-coding downstream 55109 5936737 ~ 5942361 (-)
G82768 NA non-coding downstream 88859 5908256 ~ 5908611 (-)
G82765 NA non-coding downstream 96415 5900839 ~ 5901055 (-)
G82763 NA non-coding downstream 112266 5884981 ~ 5885204 (-)
G82728 NA non-coding downstream 160402 5819554 ~ 5837068 (-)
G82777 NA non-coding upstream 42799 6040788 ~ 6042755 (-)
G82782 NA non-coding upstream 52477 6050466 ~ 6057537 (-)
G82838 NA non-coding upstream 145286 6143275 ~ 6143514 (-)
G82888 NA non-coding upstream 288095 6286084 ~ 6286304 (-)
G81547 NA other downstream 253432 5739526 ~ 5744038 (-)
G81032 NA other downstream 1246909 4748809 ~ 4750561 (-)
CI01000013_04561253_04567647 MAP2K1 other downstream 1438567 4560340 ~ 4567647 (-)
G80443 NA other downstream 1931453 4064942 ~ 4066017 (-)
CI01000013_07339918_07367774 NA other upstream 1341720 7339709 ~ 7367774 (-)
CI01000013_09309438_09335834 MICAL3A other upstream 3309047 9307036 ~ 9336077 (-)
G85170 NA other upstream 4481872 10479861 ~ 10480700 (-)
CI01000013_10564288_10569141 NA other upstream 4565470 10563459 ~ 10569290 (-)
G85188 NA other upstream 4594215 10592204 ~ 10595337 (-)

Expression


Co-expression Network