CI01000013_12104212_12115389


Basic Information

Item Value
gene id CI01000013_12104212_12115389
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 12103691 ~ 12115604 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_12104212_12115389.mRNA
ACAGTCGATTAGTTATGAAACCCGCTGCGGCTTCTTTTGTAACCTGTCAACTCGTCATTCATTCGTTTTGTAACGCGGCTCGGCGCGCTCGCGGATACATTGTAGGCTATCTGTCCGTTTTTTTATGACTCAAACTGTTACAAATGATTTTGATATATTTTATGATTAATATTCATATTTATTGCGTCGAAAATTGACGGATTTGGTCAAAGAGAATGTCTGTAGGCAAAGATTTGAAGTACGTGTCTCAGGTCCGTGAACTCCTGAGAGAGCTGATGTTGGGTCGTGAGGATCCGGACGGGTTTTTCTGTCTGTGTTTGTCTCTGCTGGGGGACACAGACACCCGAACACACTTTCTGGACGTGATCAAACCCCTTTCATTCGGACATGAACATCTACACAGTCAGCTGACTCAAATCTTTCTGGAGTACTTCTCTAAGGATGAAGCAGAGGAATTAGAGCTGGCCTTAACACTGTCTCTTAATGAAACCAAACAAATCAAAAGAGATTTTAGGCAGCAGGATTCAGACCATCACCCTAATGTGCCTCCCTGTTACAAAAGCTATGCTGACATGACTACAGTAACTTCAGGTGCTGATCAGCCAAAAGTCAGTGTAGCTTCAAAGAACCAGCCTATTGCAAAATGGACACTAGATACTGAAGTACATAAAACTACCTGTGCCATTAAAAACATAAATAAAGACGATGATCTCAAAGTTGCAAAGTCAACGAGGTCACAAAGGCGTCGTCTGCGTAAGAAGCAACTTTTGTTGAAAAACCCATCAGGACCTCGACCCGTTCTGCTGTGGTTCAGAAGGGACCTCCGCATGTGGGATAACCCTGCTCTGATTGGCTGCCTGGAGCTTGGTGCACCAGTCATACCAGTCTTTTTGTGGAATGCAGTGGAGGAGGAGGGGCCTGGGGTTACCGTCGCAACTGGTGGGGCGTCTAAATACTGGCTGCATCAGGCACTAGTGAGTCTAAACCTTTCTCTGGAGCAGCTTGGCAGTCACTTGGTGACCCTGAAGGCAGAGTCCTCATCTTTGACAGCGCTGCAGGGGTTGATTGCTGAGACGGGGGCAGCATCGGTTGTGGCAACGGCCCTGTATGAGCCGTGGCTGAAGGAAAGAGATGACAGCGTATGGGAGACACTGGAGAAACAAGGTGTTAATTGCCACATCTACCATTCCTACTGCCTTAGAGACCCCTACACGGTCACCACACGGGGCGTCGGGCTACGAGGTATCGGCTCCGTCTCTCACTTTATGAGCTGCTGCCAGCAGAACCCTGTCAGTGGACTGGGAGCTCCACTGGATGCCCCCAGTGCCCTGCCTGCTCCCTCAACATGGCCGCAGGGATGCCCGCTTATAGATCTGGAGCTTGCACGCATGCCACGCAGGAAAGATGGCACAGAGATTGACTGGGCCATGAACATTCGGAAATCGTGGGACTTCAGTGAAGAAGGAGCTCAGGCCCATCTTGAGGCCTTCCTGCGAGATGGTAAGACACATTTCCAGGGTACATGTTTTAAGGCTATGCGCTGGAGTTCAGATCGTGTCCATCTGAAGGCCTGGCAGCGTGGATTCACAGGGTACCCGCTGGTAGATGCAGCAATGAGACAGCTGTGGCAAACTGGCTGGATGAACAACTACATGAGACATGTGGTGGCCTCCTTCCTCATTGCTTATTTGCATATTCCCTGGCAAGAAGGATACCGCTGGTTTCAGGACACGTTGGTAGACGCTGATGTTGCCATAGATGCCATGATGTGGCAGAATGGAGGAATGTGTGGACTGGATCATTGGAACTTCGTCATGCACCCTGTTGATGCAGCACTGACCTGTGACCCCTATGGCACCTATGTGCGGCAGTGGTGTCCTGAACTGAAGGCACTTCCCGATGACCTCATCCATAAGCCCTGGAAGTGTCCAGCGTCAATGCTGCGTAGGGCAGGTGTGGTTTTAGGGGGCAACTACCCAGAGCGGGTTGTTATTGACCTTGAGGAGCGACGTGCACAGTCTCTGCAGGATGTTGCGTCAGTGCGGAGGCATTTTAGAGAGTTTGTAGACCAGCGATCAGGCTGTGACCTGGTGCCTCTGCCTGCCAGGCTGGTGCAGGAAACTCTGGGCAGTATGGAGGATGTTGTGAGGCATGAAGGAACTGGGTTCCTCCTCCCAGTCATCACACGCTTGGAGTTTAAACACCATTCAGAGGATCCAGACATGCAAGACAACCCATACAGCGCTGTACTAAAGGGCTACGTCAGTCGCAAACGAGACGAAACCATTGCCTTCCTAAACGAGCGAGACTTCACAGCCAGCGTGATGTGTGAGAACACACAGCGTAGAGAGAGGTTAGAGAGGGACTGTTGTCTTCTGGAGGGTCTACCTCAGCCCTCAGCCTCACGTGGCCAGGCCAGGCGTACCCCAACCAGAGACCCTTACAGCAAAGTGCCTGGAGGTGTCGCTATTCCCCACAGATAACTGAATGCTGAATGACATGTTAAGGCTGGAATACACTAAATGATTACTGCCATAGATTTTTTCCCCCCATGATTTGCAGTCTGGATCAGTTGATTGCAGTTGCCGAAAGTCAGCCAGTCTGCAGATTTTCGGTAGTCAAAAGTTGACAAATTTCACACATATTCACTTTTTTTTTTTTTTTTAGCTTCAGACTTTGATTCCTTCCAGTCAAGGGATATCAAATATATTTGATATTTTGAGCCAGTTTTTACACATACTGTTTTTTTGTCATGTTTCTCCTAGCAACAAGGCTCCTGTCAAGTTATGTAGTGTATTTCAGCTCTTAGTGCCTTTAATTTTTAAAACTAAATTTTAACATCCTTTTTAGTCGTACAGCACTTTGGTAAATAATTCAATACAAATGATCTATTTAGAATCTATTTTGTAATTAGATGTGCTGTCGTTGTCGCTCATGAGTTTATATAGCATACCATTACTTTTATAAGCTATTAGATCTAAGGTTTTCACCTGGTTACAAAAAA

Function

NR:

description
Cry5 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_12104212_12115389.mRNA True 3004 mRNA 0.48 7 12103691 12115604

Neighbor

gene id symbol gene type direction distance location
CI01000013_12040713_12093531 OTOGL coding downstream 10160 12040688 ~ 12093531 (-)
CI01000013_11970695_12013511 NA coding downstream 90180 11970550 ~ 12013511 (-)
CI01000013_11920663_11935058 NA coding downstream 168633 11920124 ~ 11935058 (-)
CI01000013_11893589_11902743 FKBP4 coding downstream 200948 11893290 ~ 11902743 (-)
CI01000013_11860175_11889068 NA coding downstream 213575 11859902 ~ 11890116 (-)
CI01000013_12125008_12129746 NA coding upstream 8919 12124523 ~ 12130312 (-)
CI01000013_12139350_12155896 NA coding upstream 23662 12139266 ~ 12158266 (-)
CI01000013_12180062_12209369 GLG1 coding upstream 63935 12179539 ~ 12209369 (-)
CI01000013_12245311_12259172 WDR59 coding upstream 129240 12244844 ~ 12259172 (-)
CI01000013_12266959_12272152 COG8 coding upstream 151003 12266607 ~ 12272152 (-)
G85718 NA non-coding downstream 137365 11961438 ~ 11966326 (-)
G85715 NA non-coding downstream 148574 11954071 ~ 11955117 (-)
G85712 NA non-coding downstream 149679 11947370 ~ 11954012 (-)
G85481 NA non-coding downstream 252492 11848267 ~ 11851199 (-)
G85454 NA non-coding downstream 328257 11770749 ~ 11775434 (-)
G85769 NA non-coding upstream 765 12116369 ~ 12116730 (-)
G85776 NA non-coding upstream 7887 12123491 ~ 12123821 (-)
G85780 NA non-coding upstream 16250 12131854 ~ 12132069 (-)
G85781 NA non-coding upstream 16907 12132511 ~ 12132736 (-)
G85798 NA non-coding upstream 48093 12163697 ~ 12163938 (-)
CI01000013_11596784_11604320 NA other downstream 502435 11596688 ~ 11604865 (-)
G85401 NA other downstream 1068225 11035032 ~ 11035466 (-)
G85188 NA other downstream 1508354 10592204 ~ 10595337 (-)
CI01000013_10564288_10569141 NA other downstream 1531251 10563459 ~ 10569290 (-)
G85170 NA other downstream 1622991 10479861 ~ 10480700 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012568 si:ch1073-390k14.1 coding NC_007129.7 CM002902.2 6126506 ~ 6143192 (+)