CI01000013_11920663_11935058


Basic Information

Item Value
gene id CI01000013_11920663_11935058
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 11920124 ~ 11935058 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_11920663_11935058.mRNA
GATGACACAGAAACGTTACCTGGAGGGACAGGTGTACTCTGTTCCACTCATCCAGCCAGACCTGAGGAGGGAAGAGGCTGTCCATCAGATCACTGATGCGCTACAGTACCTGGAAACTATATCAACAGACATCTTTAAAAGGAGCAGTTTAGAATGGACAAATGAAAGAGATAAGTGGTCGGTGGGTTACAATAGGTGTAATAAAAAGTCATTATCCAGCCAAGACAGATGGCATTGTCATAGAGCCAGAAGGGTGTCTCAGAGCGTGGAGAAGAACCATGCACACCTTCAGTCCGTCACAGACCGGATCAAATTGGCTCAGGCCAGAGTCCAGAAGATCAAAGGAAGCAAGAAAGCCACAAAGGTGTTCTCCAGTGCCAAATACCCTGCTCCAGAAAAACTGCAGGATTATTCTTCCATCTTTACGGGTGCAGTTGATCCCGCATCCCAAAAGCGGCCTCGCTTTAAAGTTCAGAGCAAACACCGCCCACTGGATGACAAGGCCTTACAGGAGAAGTTGATGTATTTGCCCGTGTGCGTAAACACTAAGAAGCACTCTGAGGATGAGACAGAGGAGGGTTTGGGAAGTCTGCCGAGAAATGTCAACTCAGTCAGCTCCTTATTGCTGTTCAACACAACGGAGAACCTCTATAAGAAATATGTGTTTCTTGACCCTCTGGCGGGTGCTGTGACTAAAACACACACAACGTTAGAGACGGAAAAGGAAGATAAGCCGTTTGATGCACCGCTGTCGATCACCAAGAGAGAGCAGCTAGAAAGACAAACCGCAGAGAATTATTTCTATGTGCCAGACCTGGGGCAAGTACCAGAGATCGATGTGCCGTCTTACCTGCCTGACTTACCTGGCATCGCTGATGACCTCATGTACAGCGCTGACCTCGGCCCAGGGTTTGCGCCGTCCGTTCCTGCCAGCAACAGCATCCCTGAACTTCCCTCGTTTGGCACAGAGCATGATGAATCTAGTGGATCCGCCCCGCCTCCTCCACCCCCACCTCCACCTATCACACCAGAATGCACTGTTGACGCAACAAGTCAAGCCACTCCCTCAAGTGTGGTCAAAGGCGCCCCTTCTGAGGTGCTACAGCCGTCGGACGGGCGAGCCAGCCTGCTGGAGTCGATCCGAAATGCCGGCGGTATAGGCAAAGCAAACCTCCGCAATGTGAAGGAGCGCAAGATGGAGAAGAAGAAACAGAAGGAACAAGAGCAAGTTGGTGCAGCAGTCAGCGGTGGAGACCTGATGTCGGACCTCTTCAATAAATTGGCCTTGCGCAGGAAAGGTATCTCTGGCAAGGTTCCAGGGCCTGGAGACTCATCCGAAGCATCTGCCAGCTCCGGCGGAGCGTTCGCCAGGATGTCAGATGTGATCCCGCCCCTTCCAGCGCCGCACCAAACGGCTGCAGATGATGAGGATGATTGGGAGGCATAACCATGGTGACCCAGAGTTGAGTGTGAAACTCAAGAGTTGAAATCCTCAAAGACAGTCTGAAAATATTGTCTCTCCAAGGAAAGCTATGGAGTGTTAAGTGAGATATTTTGTCACTTGTTTTGTAACCTCAAGGTCAGTGAATGAACAGAAGTATGAGAAGATGTGTTCTAAATGTCATTAAAACCCTTAGAGCCAGAAAGATTATATTATTAATGTCAACAACTTCCTCCAGTTCTGATCCAGTTCATGTGATGCCATCGGGGCCGTACAAGCAATTGGTTAATGTTAACGTTAACCAGTTTTATTCAGAACTGACATTATGGTTGTTTTATGTTGACATTAATACTTAATCGCACTTTTTGATGAAAGTTTTTCACTTCTCATGCACATTTAGAAAGTGACAGAGCGAAGTTGATGTTGAAATAACTAATGTTTTCCATCAAGGAAGAAAAGAATGTTTAAAAAAAAAAAAGCTATTTTGTGTTTTACATGGACTAAAACATCTCTGGCATTTGTAGCTTTAGTACAAAAAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_11920663_11935058.mRNA True 1986 mRNA 0.47 11 11920124 11935058

Neighbor

gene id symbol gene type direction distance location
CI01000013_11893589_11902743 FKBP4 coding downstream 17381 11893290 ~ 11902743 (-)
CI01000013_11860175_11889068 NA coding downstream 30008 11859902 ~ 11890116 (-)
CI01000013_11794495_11842660 C2CD5 coding downstream 77449 11794082 ~ 11842675 (-)
CI01000013_11776137_11791017 LMF2A coding downstream 129107 11775874 ~ 11791017 (-)
CI01000013_11634008_11643242 NA coding downstream 276882 11633342 ~ 11643242 (-)
CI01000013_11970695_12013511 NA coding upstream 35492 11970550 ~ 12013511 (-)
CI01000013_12040713_12093531 OTOGL coding upstream 105630 12040688 ~ 12093531 (-)
CI01000013_12104212_12115389 NA coding upstream 168633 12103691 ~ 12115604 (-)
CI01000013_12125008_12129746 NA coding upstream 189465 12124523 ~ 12130312 (-)
CI01000013_12139350_12155896 NA coding upstream 204208 12139266 ~ 12158266 (-)
G85481 NA non-coding downstream 68925 11848267 ~ 11851199 (-)
G85454 NA non-coding downstream 144690 11770749 ~ 11775434 (-)
G85676 NA non-coding downstream 213660 11706125 ~ 11706464 (-)
G85661 NA non-coding downstream 237091 11681183 ~ 11683033 (-)
G85632 NA non-coding downstream 324823 11593301 ~ 11595301 (-)
G85712 NA non-coding upstream 12312 11947370 ~ 11954012 (-)
G85715 NA non-coding upstream 19013 11954071 ~ 11955117 (-)
G85718 NA non-coding upstream 26380 11961438 ~ 11966326 (-)
G85769 NA non-coding upstream 181311 12116369 ~ 12116730 (-)
G85776 NA non-coding upstream 188433 12123491 ~ 12123821 (-)
CI01000013_11596784_11604320 NA other downstream 318868 11596688 ~ 11604865 (-)
G85401 NA other downstream 884658 11035032 ~ 11035466 (-)
G85188 NA other downstream 1324787 10592204 ~ 10595337 (-)
CI01000013_10564288_10569141 NA other downstream 1347684 10563459 ~ 10569290 (-)
G85170 NA other downstream 1439424 10479861 ~ 10480700 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012572 wash1 coding NC_007129.7 CM002902.2 6479963 ~ 6499252 (+)