CI01000013_11776137_11791017 (LMF2A)


Basic Information

Item Value
gene id CI01000013_11776137_11791017
gene name LMF2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 11775874 ~ 11791017 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_11776137_11791017.mRNA
ATGGGAGATATAAGATTGCCGAGGCACATGTTTCTGTGGTGCCTTTCTGCTATTTACATGTTCGCCTTTGCGTCTCTTTACGTGCAGATTCCAGGTCTGTATGGAAACGAGGGTTTGCTGCCAGCACGGTGGCAGCTGCGAGTGTCTGGTAAGAGTGTTGTGGAGCAGCTGAAGGATTCTCCCACCCTGCTGTGGTTTGGTCCTCGTCTGGGTTTGGACACACAGCAGTGCATGGAGCTGCTCAGTCTGGCCGGAGCTCTGCTCAGTTTAATGACTCTGGCTTTACCGCCGCTCAGAGACTGCAGAGTCTTTCTGGTGCTCTGGGTACTTTATCTGTCTCTGTACCAGGTGGGCCAGGTATTCTTATACTTTCAGTGGGATAACCTCTTGTTGGAGACAGGCTTCTTGGCCATTCTCGTTGCTCCCATGAAAATGCCCTGGTCTTCAAAGGTGTGTCTCCATGATAATGTGACTTTCTGGCTGGTGCGCTGGCTGTTGTTTCGGCTGATGTTTGCGTCGGGTATCGTCAAACTGACCAGCCGCTGCCCCACCTGGTGGGGCCTAACAGCTTTGACCTATCACTATGAGACCCAGTGTATACCGACCCCGCTGGCCTGGTTTGCTCATCAGCTGCCGGTGTGGTTCCAGAAACTCGGTGTGGTGGGAACGTTTGTTATCGAGATCGCAGTTCCTTTCCTGTTCTTCAGCCCCATACGAAGACACAGGCTTGCCGCCTTCTACATGCAGGTCCTGCTACAGGTGTTAATCATCCTGTCTGGAAATTATAACTTCTTTAATATTCTCACTATCACCCTGTGCTTGTCGCTGCTGGATGACCAACATGACAAGATGTTAAAACCAGGTCTGGTCTTTTCCAGCATCTTTACAGACTCTCTTCTCTGGACTGGCTGTAATGTTAGAGCCTTTACTTATTTTGAGTTCAATGGCTTTCTGAAGACTGTTACAGTGCCCAGTATCTGGATTGGTGTGCTGTCTCTCACATGGGAGATCATCACTGCCATGTTTAAATGTGCTTGTGTGAGGGGCGTGTTGCGGCGTCTCTGGAGCACAATCCAGTGGGCAGTGATGGCTGCGGCTACAGTCTCAATGTTTGCCATCAGTCTGGTTCCCTACACCTACTTTGAGTATGATGCCAACAGTAATCTCTGGCCTGGGATCCAGACAGCGTTTGAAGTGACCGACCGTTACCAGCTGGTCAACTCATATGGATTGTTCCGGAGAATGACCGGGGTCGGAGGTCGTCCAGAGGTGGTCATTGAGGGCAGCATGGATCGCAACACATGGACGGAGATAGAGTTCATGTATAAGCCAGGGAACATGAGCGCAGCGCCCCCTGTGGTGGCTCCGCACCAGCCCAGGCTGGATTGGCAGATGTGGTTTGCTGCTCTGGGGCCGCACACACAGAGCCCCTGGTTCAGCAGCCTCCTACACAGACTCCTGCAGGGCAAACGCGATGTGGTCAGACTCATTCAGACAGATGAGTCTCAGTATCCGTTCAGCAAACAGCCTCCTACGTACCTAAGAGCTCACCGCTACAAATACTGGTTCAGCGAGCCAAAAGAGGACGGTTCATATCCCCAGCGATGGTGGAGACGGGTGTATGTGGAAGAGTTCTATCCTATAGTGCGCCTTGGTGACTCTTACCTTGAACAGATGTTGGTTCAACATGGTTTGAAGGATAAGGCTCCTCCGAGGCGCAGCTCGAAAGCTTGGCTGCCGCGGTTATTGCGACATGTTGGCGAACATGCCCGTGAGATTCCAGCTCATCTGCTGCTGTGGACTCTCTTCAGCTCTGCAGCGACCGCATTTTTGAGAGATGTAGGCAGAGTAGTGAAACTTTCATGCATCCCAGTAGTGTCCTGGATTTAACTGCACGTTTAGTTAAACTAATCCTGATAGGAAGGCCACACTGCAAAACAAGGGATTTTTGTTGTATGCCCTCTGATTGGTCTGACAGGTAAATGCAAGACAAGGTAGGTTATCGTTTCCCCCACTGTGCACTTACTGCTTGCACCCTACATGATATCATGTTAAGTAAAACCCAGGATGTCTTCCACCATGAGACCTAAAAATAACTGTAAAAAACAACAAACAAACTGTATATTCCAATGCACATACTGGGCCTCATTAAA

Function

symbol description
lmf2a Predicted to be involved in protein maturation. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human LMF2 (lipase maturation factor 2).

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_11776137_11791017.mRNA True 2153 mRNA 0.50 15 11775874 11791017

Neighbor

gene id symbol gene type direction distance location
CI01000013_11634008_11643242 NA coding downstream 132632 11633342 ~ 11643242 (-)
CI01000013_11596784_11604320 NA coding downstream 171009 11596688 ~ 11604865 (-)
CI01000013_11566351_11566887 NA coding downstream 208987 11566125 ~ 11566887 (-)
CI01000013_11516609_11563528 VWF coding downstream 212346 11516291 ~ 11563528 (-)
CI01000013_11480488_11512738 NA coding downstream 263136 11480488 ~ 11512738 (-)
CI01000013_11794495_11842660 C2CD5 coding upstream 3065 11794082 ~ 11842675 (-)
CI01000013_11860175_11889068 NA coding upstream 68885 11859902 ~ 11890116 (-)
CI01000013_11893589_11902743 FKBP4 coding upstream 102273 11893290 ~ 11902743 (-)
CI01000013_11920663_11935058 NA coding upstream 129107 11920124 ~ 11935058 (-)
CI01000013_11970695_12013511 NA coding upstream 179533 11970550 ~ 12013511 (-)
G85454 NA non-coding downstream 440 11770749 ~ 11775434 (-)
G85676 NA non-coding downstream 69410 11706125 ~ 11706464 (-)
G85661 NA non-coding downstream 92841 11681183 ~ 11683033 (-)
G85632 NA non-coding downstream 180573 11593301 ~ 11595301 (-)
G85620 NA non-coding downstream 210368 11565132 ~ 11565506 (-)
G85481 NA non-coding upstream 57250 11848267 ~ 11851199 (-)
G85712 NA non-coding upstream 156353 11947370 ~ 11954012 (-)
G85715 NA non-coding upstream 163054 11954071 ~ 11955117 (-)
G85718 NA non-coding upstream 170421 11961438 ~ 11966326 (-)
G85769 NA non-coding upstream 325352 12116369 ~ 12116730 (-)
G85401 NA other downstream 740408 11035032 ~ 11035466 (-)
G85188 NA other downstream 1180537 10592204 ~ 10595337 (-)
CI01000013_10564288_10569141 NA other downstream 1203434 10563459 ~ 10569290 (-)
G85170 NA other downstream 1295174 10479861 ~ 10480700 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012577 lmf2a coding NC_007129.7 CM002902.2 6706140 ~ 6727914 (+)