CI01000013_11480488_11512738


Basic Information

Item Value
gene id CI01000013_11480488_11512738
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 11480488 ~ 11512738 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_11480488_11512738.mRNA
AAAATTGGAACGGGGCTCCCGAGCGCATGCGTGTTTCTACCATGAGGAGTGAGTCCTCTTCAATGCAGAGTGAGAAACTCCGCTGTCTTGCCCGAGATATCTCTGAACTGGGCCAGCAGGGCATGGCCAGCAGCGGGCATGATGCCAACGACATTGCCGAGGACACGGTGGAGCCAGGCCCTGGTCCAGGAGGAGGGCTGTGTTTTGCAGACAGCCGCAGAAGAGTGGACTACGTTCTTGTTTATCACTGCAAGAGACGTCAGTTCCAACACCGCCTCTCTGTTGTCTCTAATGGTAACGTGCCGTCTCAAAGCCCCACCCCTTCACGCAGGAGTACGAAGGGCGATATTTCGGAGGCGGTCCTGGAGGCGGGGCTTGAGATGGAACCCGCCAATGGACTAAAAGATAAAATCAGGGAGGAATTTGAAAGAAGACTTCAGGAGGAAGGCTTGGAGATTGAACATGACAAAGAGATGAGGACAGTCCGGTTTACTCGTCTTCATGTTCCCTGGTCTGTTCTCAGTCGTGAGGCAGAACTTCTTAAGATCAGAGTGCCCACTAAAAAGATACAAGCTGTCATGCTGCAACGCTTGGTCACTTCCAGTCTAGGCACAATGTCAGGATATTTCACATTGCATTGCTGTACAGACTCCATAGTCAGCCTAACTATGGACACTGGCACAGCCCACGTATCGGCTGAAAGAGAAGACGGGGCTCATGGGCGTAATAAGCTCATTTTGGACGAAGATCAATCAGCCGTTCCAGCCGGGCGTACCAGAGCCCCAGGACCCACGCACACGTGTCCTATCCCAACCGTTCAGCAGAGACAAGCTACACCTGTGAGTGCCAGCGCTTGCAGACAGCCAGACTATCATAAAAGCGCATTTACAAATGGCATTTCATCACTGCTAGCCAAAGGGGTTTATGATTCCGCCTTCCCTCTACATGATGGAGACTTTGACAGCTCAGAAGATAGAGAGCATCGCAACGACAGACAGATGTTGCATGAGGAATGGGCCAATTATGGCGCTTTCTACAAATATCAGCCAATGGACCTTATCAGGAAGTACTTTGGAGAGAAGATTGGCCTGTATTTTGCCTGGTTGGGAGTGTACACACAGCTGCTGATTCCTGCCTCAGCTTTAGGAGTCGCAGTATTCCTGTATGGCTGCTTCACCGTAGACACCAATGTGGCCAGTCAAGAGATGTGTGATGAGCGTCTTAATTTCACCATGTGTCCTCTATGTGATCGTGTGTGTGATTACTGGCAGCTGAGCAGTATCTGCAGTACTGCACGTGCCAGCTATCTATTTGATAACCACGCCACCAATGAGCTACGACCAGCATATGAGGACTTTCTTCTTAAGAAACAAGAGAAGGCGGCAAAGAATAAGAAGAAGGAAGAGCCGGACGCAGGAACAGATGACAAAGGAAGAGAGAAGCTACTGTCTGCTAAAGGAGGGCAGTCACCGCTTGCCTCAGAGTCTTTGTCATGGACAGACCGGCTGCCAGGATACTGCATCAACATATCCTCTATCCTCCTTATGGTTGGGGTCACGTTCTCTGCCGTGTCTGGAGTGATTCTCTACCGCATCATTGTGTTTGCTGTTATGTCGATGAACCCTGATCACGAGGCCAAGGCTAATGTGCGTGTTACAGTGACAACTACTGCTGTCATCATCAACTTGCTGGTGGTTCTGGTGCTGGATGAGATCTACGGTGCTATAGCGGCCTGGATTACAGAGCTTGAGATTCCAAAGACTGAATCGACATTTGAGGAGCATGTGATCTTGAAAGCTTTTTTGCTGAAGAGCATGAATTCATTTGCACCTGTCTTCTATGTGGCCTTCTTTAAGGGCAGGTTTGCCGGTCGTCCTGGTGACTATGTTTATGTCTTTAAGGATTTCCGCATGGAAGAGTGTTCTCCAGGTGGCTGTCTTATTGAAGTGTGTATTCAGCTGGGAATCATTATGCTGGGGAAGCAGCTTATTCAGAATAATGTGTTTGAAATTGCCATTCCAAAGCTGAAGAAGATGTATCGCACGTATAAGGAGGAGAAAGATGGATCGGCAGATGAGGAGGACAAAGACTCCAAACGAGAACCGCAGCGCTGGGATCTGGACTATGATCTGGAGCCATATGAGGGTTTAAGCCCAGAGTACATGGAGATGGTTATTCAGTATGGATTTGTCACACTCTTTGTGGCCTCCTTCCCGCTGGCACCAGTCTTCGCTCTGCTCAATAACGTCATTGAAATCCGACTAGATGCGGCAAAATTCGTCACTGAAATACGCCGACCTGATGCAGTCAGTGCTAAAGAAATTGGCATATGGTACAACATCTTGAGTGGAATCAGCAAGTTTGCTGTCATTACAAATGCATTTGTGATTTCCTTTACATCGGAGTTCATTCCTCGAATGGTGTATCAGTATTTGTACAGTGAGACAGGCACTATGCATGGTTTTACCAACCACACACTGGCTTATTTCAACACAAGCAACTTTAAGCCTGGTACTGCGCCGCATGACACTGATTTTGACAGACAACTCCGTATTTGCAGGTACAAAGACTATCGAGATCCACCCTGGTCTCCTGAGTCTTACCAGCTTTCTAAGCAGTACTGGTCTGTGCTCGCTGCACGCCTGGCTTTTGTTATTTTTTTCCAGAACTTGGCCATGTTCCTCAGTATGTTGGTGGCATGGTTGATCCCAGACGTGCCTCGTTCTCTGAAGGAGCAGCTGAAGAGAGAGAAAACACTCCTGATGGATCTTCTGCTCTCTGAGGAGACAGACAAGCAATGCACCCAGTCACACCCACTGACAACAAGCCACATTGATGTAGTCATCAAGGGTTTAGAGGAAGAGGAGGAGCTGCCTGTCTGCAGTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_11480488_11512738.mRNA True 2888 mRNA 0.49 24 11480488 11512738

Neighbor

gene id symbol gene type direction distance location
CI01000013_11468322_11475130 CERS3B coding downstream 5358 11468161 ~ 11475130 (-)
CI01000013_11453318_11457266 GLIPR1B coding downstream 22428 11453113 ~ 11458060 (-)
CI01000013_11438137_11444770 NA coding downstream 35320 11438065 ~ 11445168 (-)
CI01000013_11422924_11427360 SYT1 coding downstream 53128 11422719 ~ 11427360 (-)
CI01000013_11368665_11383592 NA coding downstream 96896 11368567 ~ 11383592 (-)
CI01000013_11516609_11563528 VWF coding upstream 3553 11516291 ~ 11563528 (-)
CI01000013_11566351_11566887 NA coding upstream 53387 11566125 ~ 11566887 (-)
CI01000013_11596784_11604320 NA coding upstream 83950 11596688 ~ 11604865 (-)
CI01000013_11634008_11643242 NA coding upstream 120604 11633342 ~ 11643242 (-)
CI01000013_11776137_11791017 LMF2A coding upstream 263136 11775874 ~ 11791017 (-)
G85585 NA non-coding downstream 44335 11435862 ~ 11436153 (-)
G85570 NA non-coding downstream 59197 11417265 ~ 11421291 (-)
G85569 NA non-coding downstream 65138 11413643 ~ 11415350 (-)
G85557 NA non-coding downstream 166503 11313773 ~ 11313985 (-)
G85445 NA non-coding downstream 176904 11300622 ~ 11303584 (-)
G85620 NA non-coding upstream 52394 11565132 ~ 11565506 (-)
G85632 NA non-coding upstream 80563 11593301 ~ 11595301 (-)
G85661 NA non-coding upstream 168445 11681183 ~ 11683033 (-)
G85676 NA non-coding upstream 193387 11706125 ~ 11706464 (-)
G85454 NA non-coding upstream 258011 11770749 ~ 11775434 (-)
G85401 NA other downstream 445022 11035032 ~ 11035466 (-)
G85188 NA other downstream 885151 10592204 ~ 10595337 (-)
CI01000013_10564288_10569141 NA other downstream 908048 10563459 ~ 10569290 (-)
G85170 NA other downstream 999788 10479861 ~ 10480700 (-)
CI01000013_09309438_09335834 MICAL3A other downstream 2157644 9307036 ~ 9336077 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location