CI01000013_11438137_11444770


Basic Information

Item Value
gene id CI01000013_11438137_11444770
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 11438065 ~ 11445168 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_11438137_11444770.mRNA
ATGACCTGTGCATTTGCGGTATCCTGACCTCTCACTGCCTGTAATCTGATTTGTTTCACAACAGCACTCTTGTAAGCAAGTGCGTGAGACAGACTGAAAGAAACGTTTGTGAATGTGGGCCAATCTAACTCACTGATGTCACGTGAAAAATTCAACAGAGGCACAAGGCAAAGTCCGATTCCTCTAGATGCAACTCTTGCACTCACTGCTCGCAGATTTAAAATGATAGTTACGGACAACGATAACTGGGAATCAACAACATAAAACTTTCTGCAAGCATCTGTTTGTGGATCTAGGCAGATGAGATTCTTCTGCTGATGTGAGTGGAACTAAACTAACTATCTTGACTAAACTAACTCTATCTTGATTTTCTCTACATCTGGATTTAAAAGGCCATCATGGTGTCGTCTGGTACTACACTGATTGTGGTTACGCTACTTTCAATGATGCCAATTGTGAAAGGAAGACAAGAAAGTGAAACTCTACAAAAAGGTTTCTCTGTACACACAACTGGGACTCGGACCATGATGTTTAACATCCCAAACACCAAACGAAATGAAATACATGAGAGCTTGGATGATGTTTCTCTAGATGAGTCTTTAAACTCGCTCAAGAGTCTAGAATTTTTTGCTAGTTCTGATGATTTTTCAAGAAAGACTGTGGCTGAATCAAGTGATATGCATTCAGCAGCTGATTCCACAACAACTAGATCTGCATGTAATGAAATGAATTGCAAAGATGATAAAATTGTACAAAAGGAGCCTGAGATGGATATTACTGGGCATGAGGACTTGAATAAGGTGGGATGTGATGGTGAATGCATAATTAATTCATTGTATAACACCTCTGATGGCCTGGATGATACGGCTAGTGAAGATCCAGTGGTCATCACACATCTCGGGCGAGTTCAAGGCCGTACTTTGGACAAAGCTCACGTGTTTTATGGGATTCCGTATGCTGACCCTCCTGTGGGAGAAAAACGCTGGACTCCACCTTCACCCGTGTCACCTTGGTCGTACACGTATAATGCCACATTTCCTCGTCCTGCGTGCATGCAGGTGTGTGCTGGAGAATTCTCTCGGCTGTGTCCTCCTAAGGTTAGTGAGGACTGTCTATATCTAAATGTGTTTGTACCTGTGAGCGTCAACCTGTCGTCACCGATAGTAACAGCACTTCCAGTGATGGTGTGGATTCATGGTGGTGACTTCATCGCTGGCTCGGCCTCTAAACCTCTGTACGATGGCCGCTTCATCAGTAACTATAGCAACACAGTGGTTGTAAACATGGAATATCGTCTTGGTGCATTTGGCTTCTTAGTCACAGGCAAAGATCCTGAGAGCTCTGCAGTGGGGAATTATGGGATTCTAGACCAGCAGGCAGCATTGCGCTGGGTCCAAGAAAACATTGCTGCTTTTGGAGGAGACCCAAATAAGGTCACACTGTTTGGCGAGAGCGCTGGAGCCCAATCAGTGTGTCTTCATCTGATGATGGAGAGCAGTGAGTCTTTGTTTAGACATGCAGCCATACAGAGTTTACCATTCTCTTTGCCACTAAAAACCAGATGGGATGCTGTGAAATTGGGCTGGGATTTTGCTAAACTAACTAATTGCTCAGCATTTGATCTGCCCTGTCTGCGCTCTCTCAGTTCACATGCTGTACTCAACGCACAGGCTAAATCAGGTTCTAAGATCATCAACCCCTTCCATTTCCTGGAGGTTTTTGAGACATGGGGGCCATTCATTGATGGAGAACTGATCCAGGAACAGCCAATCACAGCCTTCCAAACAGGCCGCTGGCAGAGTTACAAGCCTGTTATACTAGGTACAACCTCTGAGGAAGGCGTGATCTTTGTGTACGGCGTTTTCAACCAGTCTGTGTCAATGCTGGAATGTGTGCTCTACACTGTTGCCATTTTTAAGCAACATGCGCTCAGAATTCTGCACAAATACATTCCTTTCTACCGAAACCAGGACAGAAGAGTAATGCTTTCACAGATTGTGACAGATTATGTGTTTTTGTGTCCGGCTCGATTGTCTGCTCGTTCTGGAGTAAGAGCTGGCGGATCTGTTTGGTTGTATGTATTCGACCACGCTCCATCTGATCCCAACATATGGGCGGGGCTTCCTTTCTGCTACAATCACACCTGCCATGGGGCAGAGCTTCCCTTTCTGTTTGACTCCGCCCCCAGCACAAACTTCACACTTACACCTCAAGAGAGCCTATTGGCCAATCGAATGGCATGCTACTGGGGAGCGTTTGCCCACACGGGGGACCCAAATTCTCAAAGTGAACAGACGCACTTCTGCAGAAAGCAGAGGCTTGCTGTTTGGCCACAGTACACGGCTATAGAGGGCTGGCCCATCCTGAACCTGACTCTACAGTCACACCCACAACACGGGGACAGGGACCATTTCTGTGACTTCTGGGACCGGCTGGACATCTATTAAGGAGAGGAGATCGAGCTGGGTGAAAGACACACAAGATCATGGTTCTGACCACATATATCTATATCTAATAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_11438137_11444770.mRNA True 2519 mRNA 0.46 8 11438065 11445168

Neighbor

gene id symbol gene type direction distance location
CI01000013_11422924_11427360 SYT1 coding downstream 10705 11422719 ~ 11427360 (-)
CI01000013_11368665_11383592 NA coding downstream 54473 11368567 ~ 11383592 (-)
CI01000013_11343431_11351259 NA coding downstream 86254 11342573 ~ 11351811 (-)
CI01000013_11308893_11311699 ARF4A, ARF5, ARF4 coding downstream 126366 11307795 ~ 11311699 (-)
CI01000013_11280259_11284882 NA coding downstream 153183 11280184 ~ 11284882 (-)
CI01000013_11453318_11457266 GLIPR1B coding upstream 7945 11453113 ~ 11458060 (-)
CI01000013_11468322_11475130 CERS3B coding upstream 22993 11468161 ~ 11475130 (-)
CI01000013_11480488_11512738 NA coding upstream 35320 11480488 ~ 11512738 (-)
CI01000013_11516609_11563528 VWF coding upstream 71123 11516291 ~ 11563528 (-)
CI01000013_11566351_11566887 NA coding upstream 120957 11566125 ~ 11566887 (-)
G85585 NA non-coding downstream 1912 11435862 ~ 11436153 (-)
G85570 NA non-coding downstream 16774 11417265 ~ 11421291 (-)
G85569 NA non-coding downstream 22715 11413643 ~ 11415350 (-)
G85557 NA non-coding downstream 124080 11313773 ~ 11313985 (-)
G85445 NA non-coding downstream 134481 11300622 ~ 11303584 (-)
G85620 NA non-coding upstream 119964 11565132 ~ 11565506 (-)
G85632 NA non-coding upstream 148133 11593301 ~ 11595301 (-)
G85661 NA non-coding upstream 236015 11681183 ~ 11683033 (-)
G85676 NA non-coding upstream 260957 11706125 ~ 11706464 (-)
G85454 NA non-coding upstream 325581 11770749 ~ 11775434 (-)
G85401 NA other downstream 402599 11035032 ~ 11035466 (-)
G85188 NA other downstream 842728 10592204 ~ 10595337 (-)
CI01000013_10564288_10569141 NA other downstream 865625 10563459 ~ 10569290 (-)
G85170 NA other downstream 957365 10479861 ~ 10480700 (-)
CI01000013_09309438_09335834 MICAL3A other downstream 2115221 9307036 ~ 9336077 (-)
CI01000013_11596784_11604320 NA other upstream 153892 11596688 ~ 11604865 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012590 si:dkey-30c15.17 coding NC_007129.7 CM002902.2 7363242 ~ 7374783 (+)