CI01000013_11422924_11427360 (SYT1)


Basic Information

Item Value
gene id CI01000013_11422924_11427360
gene name SYT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 11422719 ~ 11427360 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_11422924_11427360.mRNA
ATAAACTGCCAGTCCGAGTGCACTTCTCAAATCAGAGCAGCAGAATGCATGAGGGCGATGCTCTACTGGCTGGTCCTTCCTTATCTCCAGCATCTCCAGCACAAAATGGATCGAAGGTACCTGGACCTACGAGTTCTCCTCCCACTGCTGTTCAGACTACAACCGCAGAGAGTTTGGCTCATAGCATCAGAAGCAAGTTTATGAATGAGCTTCATAAAGTCCCATTACCATCCTGGGCTTTGGTGGCCTTCGGCTTCCTCGTTGTCCATCACGGAATTGATTCTGACCCCAAAGAAGAGGATCCAGAGTCTAAAGAGGCTGCAAAATTAGGAAAACTTCTCTATACCCTTGACTACAACTTCACTGACAGTGCGGCAGAAGGTCTTGCTGCTATGGATATGAGTGGCACTTCTGATCCATATGTGAAAGTTTACCTCCTCCCTGACAAGAAGAAAAAGTTTGAGACAAAAGTTCACCGCAAAACTCTAGATCCGACTTTTAATGAGCACTTCACCTTTAAGGTTCCATATGCAGAGCTTGGTGGAAAGACGCTGGTCATGACAGTGTATGACTTTGACCGTTTCTCCAAACATGATGCTATTGGGGATGTGAGGGTGCAAATGAATAAGGTGGACTTCAGTCATCTTACAGAAGAGTGGAGAGATCTGCAGAAAGCCGAGAAAGAGGAGCATGAGCGGTTAGGTGATATTTGCTTGTCTCTGCGCTATGTACCCACTGCTGGAAAGCTGACGGTTGTAGTTCTGGAGGCCAAAAACCTCAAAAAAATGGATGTGGGTGGTCTCTCAGACCCATATGTAAAAATCCACCTGATGCAGAATGGCAAAAGACTAAAGAAAAAGAAAACCACAATTAAGAAAAACACACTGAACCCATATTACAATGAATCGTTTAGTTTTGAAGTTCCATCTGAGCAGATTCAGAAAGTACAGGTTGTGGTGACGGTGTTGGACTATGACAAAATTGGGAAGAATGATGCCATTGGAAAGGTTTTCCTCGGACAGAACAGCTCAGGAACGGAGCAGCACCATTGGTTAGATATGTTAGCCAATCCAAGAAGACCCATCGCCCAATGGCACGCACTTAAACCTGAAGAGGATGTGGATGCTGAACTGACAAAGAAGTGAAGCTGTCTGTGCGTGTCTGAGCATTTGTATACTTAAATATTCAGCAGTTTGCTTTAATTTGTGAAGTTTGTGTGTATATGTGTGCATGTATGTGGGCAGAGGTTGAGGTAGATCCAGTTAAATCTCATCTCTCTCAGCCACATTAATAATCAGAATCACTTCTTTTTCTGTATATTGTGTGCAGATTGTGCAAAGATAAATTAAA

Function

symbol description
syt1 Enables low-density lipoprotein particle receptor binding activity. Involved in positive regulation of dendrite extension. Located in cytoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_11422924_11427360.mRNA True 1350 mRNA 0.44 9 11422719 11427360

Neighbor

gene id symbol gene type direction distance location
CI01000013_11368665_11383592 NA coding downstream 39127 11368567 ~ 11383592 (-)
CI01000013_11343431_11351259 NA coding downstream 70908 11342573 ~ 11351811 (-)
CI01000013_11308893_11311699 ARF4A, ARF5, ARF4 coding downstream 111020 11307795 ~ 11311699 (-)
CI01000013_11280259_11284882 NA coding downstream 137837 11280184 ~ 11284882 (-)
CI01000013_11276658_11278225 NA coding downstream 143989 11276634 ~ 11278730 (-)
CI01000013_11438137_11444770 NA coding upstream 10705 11438065 ~ 11445168 (-)
CI01000013_11453318_11457266 GLIPR1B coding upstream 25753 11453113 ~ 11458060 (-)
CI01000013_11468322_11475130 CERS3B coding upstream 40801 11468161 ~ 11475130 (-)
CI01000013_11480488_11512738 NA coding upstream 53128 11480488 ~ 11512738 (-)
CI01000013_11516609_11563528 VWF coding upstream 88931 11516291 ~ 11563528 (-)
G85570 NA non-coding downstream 1428 11417265 ~ 11421291 (-)
G85569 NA non-coding downstream 7369 11413643 ~ 11415350 (-)
G85557 NA non-coding downstream 108734 11313773 ~ 11313985 (-)
G85445 NA non-coding downstream 119135 11300622 ~ 11303584 (-)
G85444 NA non-coding downstream 129686 11291867 ~ 11293033 (-)
G85585 NA non-coding upstream 8502 11435862 ~ 11436153 (-)
G85620 NA non-coding upstream 137772 11565132 ~ 11565506 (-)
G85632 NA non-coding upstream 165941 11593301 ~ 11595301 (-)
G85661 NA non-coding upstream 253823 11681183 ~ 11683033 (-)
G85676 NA non-coding upstream 278765 11706125 ~ 11706464 (-)
G85401 NA other downstream 387253 11035032 ~ 11035466 (-)
G85188 NA other downstream 827382 10592204 ~ 10595337 (-)
CI01000013_10564288_10569141 NA other downstream 850279 10563459 ~ 10569290 (-)
G85170 NA other downstream 942019 10479861 ~ 10480700 (-)
CI01000013_09309438_09335834 MICAL3A other downstream 2099875 9307036 ~ 9336077 (-)
CI01000013_11596784_11604320 NA other upstream 171700 11596688 ~ 11604865 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012591 syt1b coding NC_007129.7 CM002902.2 7387090 ~ 7393668 (+)