Gene
RNA
| Item | Value |
|---|---|
| gene id | G85676 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 11706125 ~ 11706464 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU97518 | True | 255 | lncRNA | 0.43 | 2 | 11706125 | 11706464 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_11634008_11643242 | NA | coding | downstream | 62883 | 11633342 ~ 11643242 (-) |
| CI01000013_11596784_11604320 | NA | coding | downstream | 101260 | 11596688 ~ 11604865 (-) |
| CI01000013_11566351_11566887 | NA | coding | downstream | 139238 | 11566125 ~ 11566887 (-) |
| CI01000013_11516609_11563528 | VWF | coding | downstream | 142597 | 11516291 ~ 11563528 (-) |
| CI01000013_11480488_11512738 | NA | coding | downstream | 193387 | 11480488 ~ 11512738 (-) |
| CI01000013_11776137_11791017 | LMF2A | coding | upstream | 69410 | 11775874 ~ 11791017 (-) |
| CI01000013_11794495_11842660 | C2CD5 | coding | upstream | 87618 | 11794082 ~ 11842675 (-) |
| CI01000013_11860175_11889068 | NA | coding | upstream | 153438 | 11859902 ~ 11890116 (-) |
| CI01000013_11893589_11902743 | FKBP4 | coding | upstream | 186826 | 11893290 ~ 11902743 (-) |
| CI01000013_11920663_11935058 | NA | coding | upstream | 213660 | 11920124 ~ 11935058 (-) |
| G85661 | NA | non-coding | downstream | 23092 | 11681183 ~ 11683033 (-) |
| G85632 | NA | non-coding | downstream | 110824 | 11593301 ~ 11595301 (-) |
| G85620 | NA | non-coding | downstream | 140619 | 11565132 ~ 11565506 (-) |
| G85585 | NA | non-coding | downstream | 269972 | 11435862 ~ 11436153 (-) |
| G85570 | NA | non-coding | downstream | 284834 | 11417265 ~ 11421291 (-) |
| G85454 | NA | non-coding | upstream | 64285 | 11770749 ~ 11775434 (-) |
| G85481 | NA | non-coding | upstream | 141803 | 11848267 ~ 11851199 (-) |
| G85712 | NA | non-coding | upstream | 240906 | 11947370 ~ 11954012 (-) |
| G85715 | NA | non-coding | upstream | 247607 | 11954071 ~ 11955117 (-) |
| G85718 | NA | non-coding | upstream | 254974 | 11961438 ~ 11966326 (-) |
| G85401 | NA | other | downstream | 670659 | 11035032 ~ 11035466 (-) |
| G85188 | NA | other | downstream | 1110788 | 10592204 ~ 10595337 (-) |
| CI01000013_10564288_10569141 | NA | other | downstream | 1133685 | 10563459 ~ 10569290 (-) |
| G85170 | NA | other | downstream | 1225425 | 10479861 ~ 10480700 (-) |
