CI01000013_11794495_11842660 (C2CD5)


Basic Information

Item Value
gene id CI01000013_11794495_11842660
gene name C2CD5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 11794082 ~ 11842675 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_11794495_11842660.mRNA
AAGACTAGAAGAATAATGCCTGGGAAGTTAAAGGCGAAGATAGTTGCAGGGCGGCACCTGCCTGTCATGGACCGTGCCAGCGATCTCACAGATGCCTTCGTGGAGGTGAAGTTTGGAAACACAACATTTAAAACGGATGTATACCCCAAGTCCCTGAATCCTCAGTGGAATTCTGAGTGGTTCAAATTCGAGGTGGATGACGAGGATTTGCAGGATGAGCCATTGCAGATAACTGTTCTTGACCATGACACATACAGCGCTAATGATGCTATTGGAAAGGTTTACATTGACATTGATCCATTACTCTGCAGTGAAGCTGCTACTGTCATCTCTGGCTGGCTCCCCATTTATGACACTATACATGGTATAAGAGGGGAAATTAATGTGCTGGTGAAGGTGGATCTCTTCAATGACCTGAACCGCTTCAGACAGTCTTCATGTGGGGTTAAATTCTTCTGTACAACATCCATTCCCCGATGTTACCGGGCCGTTATGATTCATGGCTTTGTGGAAGAGCTTGTGGTGAATGAGGATCCAGAGTACCAGTGGATCGACCGTATCAGAACCCCTCGTGCATCAAACGAGGCCCGACAGAGACTCATCTTTCTCATGTCAGGTGAATTGCAGAGGAAGATTGGGCTGAAGGTGCTGGAGATGGGAGGGAATGCAGTGGTTGGGTACCTGCAGTGTTTTGATCTGGAAGGGGAATCAGGCCTTGTGGTTCGTGCCATCGGGACAGCCTGCACACTTGAGAAAATCAGCACACTCCCTGCCACAGCCACACTCCCCAGCAACTCCTCTCCTTCAAAAGACATGAAAGACTCTCCGCAGGCTGCTCCTTCCACTCTCGGATGTCGTTCCACACACAGCAGTCCAGTTCACAGTGCGAGCAGTCGTCTTTCTCAGGGCTTCTCCGTTTCTGTGCCAACACTGCTGTTCGCCGACAGCTACGACATCACCAGACCCCCTCCCTTCAGCTGCCAAAGCAACCTCGTTTACAGATTTAAAACGCCTCTGACTAATCAGCCAGGTTTTGGGGAGGAGGCCCCAGGCGTCCCGTTGTCCTCGGGACCCCCCACCCCTCTGAGAGCACAAACCTTCTCCTCCTTCTCCCCCTCCAAGTCCTACAGTCGCCAGTCCTCCTCCTCTGACACCGAGCTCAGCCTAACCCCCAAAACCGCGAGGATATTTCTGTGTCCCAGTTCTCCCGCCCTTGAATCTGAATCATCTCCCCTCCCCTCTGCCCATCTGCCCTGTCACTTTCGGCCAGGGATGGCCTCCAGGAGTACAACTCCTCCCCCTCTCCATGTCAGCCAATCAGACACAGCCATGCTTCGAAAGAGCGTGTCTTTCAGTGAGGAACTGCTGCTGGCGGCCTCTGGAATGGGAAGTGGCGGCAGTGCAGGGAAGGAGGCAGGGCCTCTTAAAGCTCTTCTGAGGCAACAGACCCAATCAGCACTGGAGCAGAGAGTAAGACAAAGACAGTATATTCACATGTGTTTATATATTCACTATCAAGTTTATGCACAAAAGACTGGTGATTATGAGAATTATGTTTCCCCACTCTATCGCTCTCTCACTGGACTTCAGGGGGTTTCATCATCCTCTGAAGCATTTGTTAGGACAGGGGAATACCCTTTCTTCACGTTGACCTCCTTCCCTCCTGGATTTCTCCTTCACTTGGGGGGTGTGGTCAGTGCACGCTCAGTAAAGCTTCTGGATCGAATCCACAACCCAGACGAGCCGGAGACACGGGATGCGTGGTGGGAGGAGATCCGTCAGGAAATAAAGTCTCATGCCAAAGCTCTCGGCTGCCACGCTGTGGTGGGGTACAGCGAGTCCACCAGCATCTGTGAGGAGGTGTGTATTCTGTCAGCATCAGGCACTGCTGCGATCCTCAGCTCCCGTTTCATGCAGGACGGCCCGTTGGACACCGATCACAGGTTGTCACGGCAACCGCTTGTCTTTTCTGCAGGGTCAGAAAGGGTCGAGGGGGATATGGGTAGTACAGCCTCGTTAGGATTTGAGGAGGTGGCTCCCCCTGGCTGTGGGTTCTGTCACATACCGTACGATGAGTTGAATATACCATTTCCTGCTCAGCTCACCTATTGCTGCTGCTGTCGCCGCTACAAAGTGCCCGATGTCCTCTTCACCACGATCGACCTGCCTACTGAAGCCAACGTCACGGGGAAGGGCTGCCTGATTCAGGCCAGGCTGTGTCGGACTAAAAAGAAGGCCCAGGGAGAGGGGAATGCCACATCCATTAGCAATCTTCTGCCGTTCCTAGAGTACGAGCTCCACACCCAGCTGATGAACAAATTGAAGCTACGGGGCATGAATGCTTTGTTCGGTCTGCGTATCCAAATCAGCGTAGGAGAGACCATGCTGCTAGGAATGGCGTCTGCAACAGGAGTCTATCTGACAGCGCTACCCAGTCCAGGAGGAATCCAGATATTGGGAAAAACTCCCAGTGACATCACATACGAACAGCACATCTCTAATATGCAGAAGAAAATCAATGACACCATCGCTAAAAATAAAGAACTGTATGAAATCAACCCACCTGAGGTTGTTGAAGAGATCATTGGTTCGCCGATTCCTGAGCCCCGTCAGAGGTCCCGTCTCTTTCGTTCTCACTCAGAGAGCTCAGATGAGGTGTCAGAACTAGACCTCTCCCATGGGAAGAAGGATGCCTTTGTGTTGGAGATTGATGACACGGACGCTGTGGAAGATATTCATGCACTTCTGATTGATTCTCCCACCCCAGCAGGATTCTACAGCTGCAACACTGAAATCATGCCTGGGATTCAGAACTGGACTTCAGCTATACAGATGTTTACCTCTGTGAGGGTCTTTCGCCTTAACAACGTCAACTTGACCAATCAGGGACTGAATAAGATTTTCAGTGACCTCTGTGAGAACCTGCTTAAGAGTTTGTACTTCAAACTGCGGTCAATGGTCCCCTGCTGTCTTTGTCACCTGAACTTCACCGTGGCCATACCTGAAGATGAGCTCATCCAGGTGGCAGTGACAGCTGTGGCAATGAGCTTTGACAAAGAGCAGACTCTGGAGAATGGCAAACAAAGTGGGGACAAGACACTAATAAAGGCAATAACAGAAAATGACGAGCAGCTTCAGTTCAACCTGGAGCTCAATGCTGAAACATCTTCTTCCAACCCTCTTAGCTCCCCCAAAGGTCTATCAGAGATTGGCAGCCATCCATCGGCCAAAGCATCATCTATGGAGAAGGCCAGCCCGTTGCCCGAAGGTCGCTCTCGTTCTCTTCGGTCGAATCGCTCCTACTCGGGCAGTTCTGTCGCAGTGGTCAAAATGACCCCGCTCTCGTTCATTCCTGGTGCAAAGATCATAAAATACCTCGGCATCATCAACATGTTCTTCATTAGAGAGACCACCTCACTGAAAGAGGAGGGAGGTGTGAGCGGCTTTCTGCATACGTTCATAGCTGAAGTATTTGCGATGGTTCGCGCCCACGTCGCTGCTCTTGGAGGGAATGCTGTTGTCTCCTACAGCATGAAGGAGTGTGTGTTTATGGAGAACCCTAACAAGAACCAGGCGCAGTGCCTAATCAACGTCAGTGGGGATGCCGTTATCTTTGTTCGAGAATCTGAACTCGAGGCGGCTTCGGTACAGCCACAGTCAACCACCACACAGACCTCCAACGGTGGGGAAGGAACGTGAACCCACACACACACACCGACAAACTCAAGTAAATGAGTCTCAACATGAACCTTGCCATTTGAAGAGATGTCACGATACAACTACCAACCAAATCTCCAACAAGAAGTTAAAATCTAGACACACATAACATGACCTGATTGGTTAGTTCTCCCATGTGTTATATTTTAGCCCCTGTAAATGGCCAATATTTTTTTATTTCGGAATAATGTTTTAAAATCCCTCCATCGGAAGCCTTTCAGAAAGGTCGTCTGCCATGTTTCTATGTGTTGTCCGTTGTTGTTCACATTCCATTTTGTCCATATGTGGCGAAGGCAGCTACAAAATCCAAAAGATCTGTAAAATGCGTTTGTGTTCTCAAAGAGTGTGTAAACGTGTCAACGACTCCAAATGGCCATGTTTTATATTTAAATAAA

Function

symbol description
c2cd5 Predicted to enable calcium ion binding activity and calcium-dependent phospholipid binding activity. Predicted to be involved in intracellular protein transmembrane transport; positive regulation of transport; and protein localization to plasma membrane. Predicted to be active in plasma membrane. Orthologous to human C2CD5 (C2 calcium dependent domain containing 5).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_11794495_11842660.mRNA True 4112 mRNA 0.50 28 11794082 11842675

Neighbor

gene id symbol gene type direction distance location
CI01000013_11776137_11791017 LMF2A coding downstream 3065 11775874 ~ 11791017 (-)
CI01000013_11634008_11643242 NA coding downstream 150840 11633342 ~ 11643242 (-)
CI01000013_11596784_11604320 NA coding downstream 189217 11596688 ~ 11604865 (-)
CI01000013_11566351_11566887 NA coding downstream 227195 11566125 ~ 11566887 (-)
CI01000013_11516609_11563528 VWF coding downstream 230554 11516291 ~ 11563528 (-)
CI01000013_11860175_11889068 NA coding upstream 17227 11859902 ~ 11890116 (-)
CI01000013_11893589_11902743 FKBP4 coding upstream 50615 11893290 ~ 11902743 (-)
CI01000013_11920663_11935058 NA coding upstream 77449 11920124 ~ 11935058 (-)
CI01000013_11970695_12013511 NA coding upstream 127875 11970550 ~ 12013511 (-)
CI01000013_12040713_12093531 OTOGL coding upstream 198013 12040688 ~ 12093531 (-)
G85454 NA non-coding downstream 18648 11770749 ~ 11775434 (-)
G85676 NA non-coding downstream 87618 11706125 ~ 11706464 (-)
G85661 NA non-coding downstream 111049 11681183 ~ 11683033 (-)
G85632 NA non-coding downstream 198781 11593301 ~ 11595301 (-)
G85620 NA non-coding downstream 228576 11565132 ~ 11565506 (-)
G85481 NA non-coding upstream 5592 11848267 ~ 11851199 (-)
G85712 NA non-coding upstream 104695 11947370 ~ 11954012 (-)
G85715 NA non-coding upstream 111396 11954071 ~ 11955117 (-)
G85718 NA non-coding upstream 118763 11961438 ~ 11966326 (-)
G85769 NA non-coding upstream 273694 12116369 ~ 12116730 (-)
G85401 NA other downstream 758616 11035032 ~ 11035466 (-)
G85188 NA other downstream 1198745 10592204 ~ 10595337 (-)
CI01000013_10564288_10569141 NA other downstream 1221642 10563459 ~ 10569290 (-)
G85170 NA other downstream 1313382 10479861 ~ 10480700 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location