CI01000015_00886425_00888351 (TM4SF18)


Basic Information

Item Value
gene id CI01000015_00886425_00888351
gene name TM4SF18
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 885231 ~ 888806 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000015_00886425_00888351.mRNA
ATATAAATATTCCAGGTTATAACACATTAACAGCATACATGCATTTAACACCAGATGTGAGTTCAATACAAACAGCAACAACTTTTGCTATTTCTGGAAAGTCTTCTTTCTGGCTCATTTCCCATTAATGTTTTGCTAGGGTTACGGCCTTTAAATCCGAATAAATAAATTAATCAATGAATAAATAAAGGACAGAAACAAGATATTTTTAATATACTGCAAATGTTAAACAATATTCATATTGCATTGCATTGCAGGCTGTTAATTATTGAACTAATATTTTACTTCAATTAAAGTTTATTAGAGCTGATCATATCTACATAGAAGAAAAAGTCATAGCTTCTTCCTTAAATCATGGAATCCAGGCTATAAAGCTCTTAAATTTCCTTAGTTGCCTCAATAAAAAGTTTCCATTGTTCTTGGACAGAATCCAGAGTTTAACTGTAACATCATGACACAGGCAAAAACCATGCTCCTCATTACCATGGTTTTTATGGTTTCTATAATAATAATAACAATAACAACAACAACAACAACGATAATAATATTACTAAGAATAAACTATGGTATTTGTAATTAAAAAAATTAAACATGAAAAAAAAATCAACTTCTAAAAGTGACTTATATTGCCCTTATATTACCTAATATTTAATATAAAGCTAATAGTAGTAAGATTAATAATATATACCATACATTTCTACGAGTTTGTCATCACTGTGTGTAAGACAGTCCAGCTGCTCTCACACTGCGACTGCTGGATGCGCGTGTGATTTAATCAGGTAGCGCCGTTTCATCACTTGGCTTTTGTTGTTTGTTTCCCATGCGCTTGCAGCACTCCAGTAAATAACAGCATTTAATATGCGGGGCCGTGGTGAGGTTTTGTTGATCAGCCCAGCAGGAAAAGTTCAGGTTCTCCCGATGTCCAGTCAATCCTTCCCTCGGCCAATCACGGGCCCCCTCCATGCTCTGGCCCTGGGGCTTCAGCCCCACCTAGCCCTTATGTTAATCTGGCCCTGAGTTATACTGTATAATGTCAGCCCGTTTCCTGTCTCCTCCTCCTCAGAGGAACAGCAGCTCATGGGGGACCGAGGAGGGGGGTAGTCTCTTAAAATTCTTCCACTCGTCCGTCCACCACTATAGTTTCCTGTCCCGGATTACAGCCGCCTGTTCTCATTCCCTCTGCTCCGTGTGAAGATGTGTTCTCTGAGCTTCGCCAGGTCTCTGGGTTTCGCCCTCATTCCCCTCGCCACTTGCTGCATTGTGGCAAATGTCCTGCTCTTCTTTCCTGATGGAAATGTGATATATGTTCAGGAGGAGCATGTGACTACATTTGTCTGGTACTTTATGGGAATCGGAGGAGGTGGTTTGGTGATGCTGATTCCGGCCTGCGTGTTTCTGGGAATGGGGAAGTGTGTGGATTCCTGTGGAACAGACAGCTGTGCGATGTGTGGTTCAGTGATAGCGGCTCTGGTGGGGCTAGTTGGCTCTGGATACTGCTTCCTGATCTCCGCTGTGGCGCTCTTGAAGGGGCCGTATTGCTACACTACGATGGGATGGAGGTCTCCTTTTGAGACCGACGGGGGGAAGTATCTCTTTGCTCAAGAGAGATGGTCTGACTGCGTTTACCCAAAACACATTGTGGAGTGGAATGTGACGTTGCTGTCCATCCTGTTGGGTCTCAGCACCCTTGAGTTCCTTATCTGTTTCCTGCAGTTCATCAGTGGTCTGGTTAATGCAGTGTGCCGGCCATGCTGCTACAAACAAGAGTACAGTCTAAACGCTTGAGGACGGCGCACTTCCCAGCCTCCATCAATCGGAAACAGGACTGCTCATCTGCAGCAGAAACACTGGGCCATCAGAGAGCCAACAGAACTGTCAATCACACACTCACACACATTAACAACTGTAAGTCGCCTTGGATAAAAAAAATAAAAATAAAAAATGTAAACATTAAGTCACTGCATTTCTAATGAATGTATTGAAACATTTCAACATCACTCCAGCCGAATTTGTATTAGCAGTGCATGTTTTCTGTATAGAACAAACATTTGTATTGTATACTACCTGCAATATGCATTTTGCTAAAATATAAAAGTATTTTTGTATGAGTTCTGGTCGTTTTGTACAGGAAGTTGTTTTGTAAATTATTTAAATATTGAGAGTATTAGAAGAACAGTTGGTGAATGTTGTTTTATATACCTATAAAAGCTGTAATATGTCTCGAATATTCCCTTCAGTAA

Function

symbol description
tm4sf18 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in dorsal aorta and intersegmental vessel. Orthologous to several human genes including TM4SF1 (transmembrane 4 L six family member 1).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000015_00886425_00888351.mRNA True 2240 mRNA 0.41 4 885231 888806

Neighbor

gene id symbol gene type direction distance location
CI01000015_00800582_00853181 WWTR1 coding upstream 32050 800582 ~ 853181 (+)
CI01000015_00790715_00793401 COMMD2 coding upstream 90570 790440 ~ 794661 (+)
CI01000015_00749679_00758875 NA coding upstream 125934 749381 ~ 759297 (+)
CI01000015_00690873_00738349 KCNH1, KCNH1B coding upstream 145515 690478 ~ 739716 (+)
CI01000015_00677822_00681741 NA coding upstream 203425 677755 ~ 681806 (+)
CI01000015_00890625_00902801 CP coding downstream 1819 890625 ~ 902996 (+)
CI01000015_00970175_00973727 NA coding downstream 81369 970175 ~ 973740 (+)
CI01000015_01002365_01011214 HYKK coding downstream 113559 1002365 ~ 1011275 (+)
CI01000015_01015968_01016675 NA coding downstream 126817 1015623 ~ 1017700 (+)
CI01000015_01020856_01025441 HOGA1 coding downstream 132050 1020856 ~ 1025653 (+)
G86933 NA non-coding upstream 228505 656227 ~ 656726 (+)
G86932 NA non-coding upstream 229084 655932 ~ 656147 (+)
G86931 NA non-coding upstream 229309 655318 ~ 655922 (+)
G86908 NA non-coding upstream 293634 590779 ~ 591597 (+)
G86783 NA non-coding upstream 392397 491955 ~ 492834 (+)
G87246 NA non-coding downstream 112435 1001241 ~ 1001459 (+)
G87249 NA non-coding downstream 120566 1009372 ~ 1009607 (+)
G87253 NA non-coding downstream 124778 1013584 ~ 1013801 (+)
G87432 NA other downstream 722277 1611083 ~ 1611387 (+)
G87972 NA other downstream 987198 1876004 ~ 1876594 (+)
G88172 NA other downstream 1495210 2384016 ~ 2526510 (+)
CI01000015_02512276_02523824 NA other downstream 1623292 2511546 ~ 2524572 (+)
CI01000015_03011472_03026518 NA other downstream 2134190 3011472 ~ 3026636 (+)

Expression


Co-expression Network