G115969


Basic Information

Item Value
gene id G115969
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 1801158 ~ 1802398 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU131728
AACTGACAACTAAGGAAAATCCCAAATTCAGTATCTCAGAAAATTAGAATATTACTTAAGACCAATAAAAAGAAAGGATTTTTAGAAATCTTGGCCAACTGAAAAGTATGAACATGAAAAGTATGAGCATGTACAGCACTCAATACTTAGTTGGGGCTCCTTTTGCCTGAATTACTGCAGCAATGCGGCGTGGCATGGAGTCGATCAGTCTGTGGCACTGCTCAGGTGTTATAAGAGCCCAGGTTGCTCTGATAGTGGCCTTCAGCTCTTCTGCATTGTTGGGTCTGGCATATCGCATCTTCCTCTTCACAATACCCCATAGATTTTCTCAAAGGAAATGCAAAATTTACTTTCATCAGAGAACATAACTTTGGACCACTCAGCAGCAGTCCAGTCCTTTTTGTCTTGATGCTTCTGACGCTGTCTGTTGTTCAAGAGTGGCTTGACACAAGGAATGCGACAGCTGAAACCCATGTCTTGCATACGTCTGTGCGTCGTGGTTCTTGAAGCACTGACTCCAGCTGCAGTCCACTCTTTGTGAATCTCCCCCACATTTTTGAATGGGTTTTGTTTCACAATCCTCTCCAGGGTACGGTTATCCCTATTGCTTGCACACTTTTATCTACCACATCTTTTCCTTCCCTTCGCCTCTCTATTAATGTGCTTGGACACAGAGCTCTGTGAACAGCCAGCCTCTTTTGCAATGACCTTTTCTGTCTTGCCCTCCTTGTGCAAGGTGTCAATGGTCGTCTTTTGGACAACTGTCAAGTCAGCAGTCTTCCCCGTGATTGTGTAGCCTACAGAACTAGACTGAGAGACCATTTAAAGGCCTTTGCAGGTGTTTTGAGTTAATTAGCTGATTAGAGTGTGGCACCAGGTGTCTTCAATATTGAACCTTTTCACAATATTCTAATTTTATGAGATACTGAATTTGGGATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU131728 True 939 lncRNA 0.43 2 1801158 1802398

Neighbor

gene id symbol gene type direction distance location
CI01000021_01771612_01785627 EXOSC10 coding upstream 15492 1771389 ~ 1785666 (+)
CI01000021_01717640_01718394 NA coding upstream 82279 1717640 ~ 1718879 (+)
CI01000021_01519982_01528860 GSS coding upstream 272053 1519982 ~ 1529105 (+)
CI01000021_01506852_01513139 BIRC7 coding upstream 287852 1506216 ~ 1513306 (+)
CI01000021_01463736_01472529 CACNB3, CACNB3A, CACNB3B coding upstream 328272 1463736 ~ 1472886 (+)
CI01000021_01977248_01980449 NA coding downstream 174541 1976939 ~ 1980506 (+)
CI01000021_02230472_02252713 NA coding downstream 427593 2229991 ~ 2253146 (+)
CI01000021_02269000_02272309 NA coding downstream 466291 2268689 ~ 2272396 (+)
CI01000021_02322467_02328819 SNX21 coding downstream 520069 2322467 ~ 2329864 (+)
CI01000021_02331361_02334546 NA coding downstream 528752 2331150 ~ 2334622 (+)
G115968 NA non-coding upstream 30955 1769972 ~ 1770203 (+)
G115959 NA non-coding upstream 128348 1672470 ~ 1672810 (+)
G115941 NA non-coding upstream 155280 1645599 ~ 1645878 (+)
G115870 NA non-coding upstream 284216 1516681 ~ 1516942 (+)
G115836 NA non-coding upstream 295016 1496436 ~ 1506142 (+)
G115970 NA non-coding downstream 14 1802412 ~ 1803161 (+)
G115973 NA non-coding downstream 8485 1810883 ~ 1811363 (+)
G115837 NA non-coding downstream 9548 1811946 ~ 1876510 (+)
G115976 NA non-coding downstream 12300 1814698 ~ 1814987 (+)
G115845 NA non-coding downstream 84151 1886549 ~ 1888740 (+)
CI01000021_01332646_01333910 NA other upstream 466749 1331665 ~ 1333951 (+)
G115519 NA other upstream 1317194 480530 ~ 483964 (+)
G116236 NA other downstream 487419 2289817 ~ 2297195 (+)
G117237 NA other downstream 1435456 3237854 ~ 3243364 (+)
G117202 NA other downstream 1466746 3269144 ~ 3328233 (+)
G117484 NA other downstream 2153748 3956146 ~ 3957752 (+)
G117493 NA other downstream 2230602 4033000 ~ 4035676 (+)

Expression


Co-expression Network