Gene
RNA
| Item | Value |
|---|---|
| gene id | G117031 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000021 |
| NCBI id | null |
| chromosome length | 7014339 |
| location | 2818461 ~ 2839917 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU132970 | True | 1524 | lncRNA | 0.47 | 12 | 2818461 | 2839917 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000021_02581650_02610697 | NA | coding | upstream | 206854 | 2581650 ~ 2611607 (+) |
| CI01000021_02495559_02501217 | FAM217B | coding | upstream | 316734 | 2495559 ~ 2501727 (+) |
| CI01000021_02402058_02447882 | PHACTR3A | coding | upstream | 370579 | 2401679 ~ 2447882 (+) |
| CI01000021_02378299_02383589 | NA | coding | upstream | 434701 | 2378044 ~ 2383760 (+) |
| CI01000021_02346223_02369457 | NA | coding | upstream | 447372 | 2346005 ~ 2371089 (+) |
| CI01000021_02877008_02877864 | NA | coding | downstream | 36600 | 2876517 ~ 2878823 (+) |
| CI01000021_02930718_02985342 | CNTN3A.2 | coding | downstream | 90801 | 2930718 ~ 2985342 (+) |
| CI01000021_03044076_03086657 | NA | coding | downstream | 204159 | 3044076 ~ 3086657 (+) |
| CI01000021_03101146_03115161 | RYBPA | coding | downstream | 261036 | 3100953 ~ 3115468 (+) |
| CI01000021_03119361_03125084 | EIF4E3 | coding | downstream | 279444 | 3119361 ~ 3126781 (+) |
| G117073 | NA | non-coding | upstream | 1768 | 2812483 ~ 2816693 (+) |
| G116277 | NA | non-coding | upstream | 238942 | 2543205 ~ 2579519 (+) |
| G116273 | NA | non-coding | upstream | 251813 | 2558740 ~ 2566648 (+) |
| G116324 | NA | non-coding | upstream | 278133 | 2540114 ~ 2540328 (+) |
| G116320 | NA | non-coding | upstream | 282897 | 2535088 ~ 2535564 (+) |
| G117137 | NA | non-coding | downstream | 27894 | 2867811 ~ 2868128 (+) |
| G117138 | NA | non-coding | downstream | 30038 | 2869955 ~ 2870327 (+) |
| G117161 | NA | non-coding | downstream | 49322 | 2889239 ~ 2889861 (+) |
| G117164 | NA | non-coding | downstream | 52190 | 2892107 ~ 2892529 (+) |
| G117182 | NA | non-coding | downstream | 184115 | 3024032 ~ 3024233 (+) |
| G116236 | NA | other | upstream | 521266 | 2289817 ~ 2297195 (+) |
| CI01000021_01332646_01333910 | NA | other | upstream | 1484052 | 1331665 ~ 1333951 (+) |
| G115519 | NA | other | upstream | 2334497 | 480530 ~ 483964 (+) |
| G117237 | NA | other | downstream | 397937 | 3237854 ~ 3243364 (+) |
| G117202 | NA | other | downstream | 429227 | 3269144 ~ 3328233 (+) |
| G117484 | NA | other | downstream | 1116229 | 3956146 ~ 3957752 (+) |
| G117493 | NA | other | downstream | 1193083 | 4033000 ~ 4035676 (+) |
| CI01000021_04886787_04893309 | PLAGL2 | other | downstream | 2002816 | 4886337 ~ 4893474 (+) |
