CI01000021_02581650_02610697


Basic Information

Item Value
gene id CI01000021_02581650_02610697
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2581650 ~ 2611607 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_02581650_02610697.mRNA
GACTGCAAGTGATTGCTATGTCAGAGAGAAGTTCAACCACAAAGAATACAGCAGACGGAGGTTATATGGATCACGATTCAAAGATGTCGGATGAGCACAGAGATACGGATGATTCGTCGGAGAAAACGCCAAGTAGGATGTCCAGATCCCCGCAGAAATCCTCCAAAAGACCAAAGACAGTACCTGTGAAAGTCACACTGCTAGATGGATCTGCCTATGAGACCGGGGTGGAGAAGCTCTGCAAAGGACAAGTGTTACTGGATGCGGTATGTGAACATCTCAACCTCTTGGAGAAGGACTACTTCGGCTTAACCTTCAGTGACACAGAGAGCCAAAAGAATTGGCTAGATCCTTCAAAAGAAATCAAGAAACAAATCCGTGTGGGTCCCTGGCATTTCTCCTTTGCTGTCAAATTCTATCCTCCCGATCCGTCTCAGCTGATTGAAGACATCACACGGTATTACCTGTGTCTGCAGCTGAGGGAGGACATACTGTCAGGTCGTTTGCCCTGCTCGTTTGTCACTCATGCTCTACTGGGCTCATACGCCGTTCAGGCTGAGCTGGGAGACTATGACCCAGAGGAACATGGGCCAGACTACATCAGCGAGTTCCGCTTCGCCCCCAATCAGACCCGTGAGCTGGAGGAGAGGGTGATGGAGCTGCACCGCACCTACAGGGGCATGAGTCCTGCAGAGGCCGAGATCAACTTCCTGGAGAACGCCAAGAAACTCTCCATGTATGGCGTTGATCTCCATCATGCTAAGGACTCTGAAGGCATTGACATCATGCTAGGAGTGTGTGCCAGTGGCCTCTTGATCTATAGAGACCGGCTGCGTATCAACCGATTCGCCTGGCCCAAGATCCTCAAAATATCCTACAAGAGAAGCAACTTCTACATCAAAATCCGACCTGGAGAGTACGAGCAGTTTGAGAGCACCATTGGCTTCAAGCTGCCCAACCACCGTGCCTCTAAGCGCTTGTGGAAGGTCTGCATTGAACATCACACATTTTTCAGGTTGGTCTCTCCTGAGCCTCCCCCTAAAGGTTTTCTTGTGATTGGCTCGAAGTTCCGCTACAGTGGGCGGACCCAAGCCCAGACTCGCCAGGCCAGTGCTTTGATTGACAGGCCAGCTCCTCAGTTTGAACGATCAATTAGTAGGAGGTACCTGCTGTCCCGCAGCATAGATGGAGAGTCTGCTTTAGGGGACACTATGGACCGACTCTCCCAGCACACCTCTTGCGAGCCTGTGCATAGTCTTCCCAGAGATGAGCTGGACCAGGACTACCTGGAGCCCAGTCTGGATCAGGACCTGGACCAAGATCATGAACAAGATGTAGATCAGCGACTAGAGAGTGACTCCACTCCCTCTAAGACTATGGAGCTCAAGCAGTTCCTGGATAAACCAGAGGATGTGTTGCAAAAACATCAAGCCAGCATCAATGAGCTGAAAAGAGCGCTGAGAGAGCCCAACAGCAAACTGGTCCACAGAGAGAAACGTCTCTCTGGAGCTTCATCCGGTAGCACTCCGGAGAAAAAATCTGCCTCAGAGGAGTCCCTATTGATTGAGAAGCAAGATGGTTGTCAAAGAGACCTGCCCCTCAGTAAAAAAGACGAAAAGAGCAGGAGTCCTAGAGTAGCTTCATTAGCCACTGGATTCAACAGAGAGACAGAAGACAGAATAAGAGAAAAATCCATCACCACACACAGTGAAACGAGAGAAAAACAAAATGTAGTAAAAAGGACCTTAACAGAAACCATCCTATCACCAGAGAAGCCCCTGAGAAATCGTGCTAAGAGCCCTGCTTTAAGGTACAACCATTTCCAGGGAGCTGGTTCTTTGGAGGAGAAAGCATATGATAATGGGCACCCGCAGGACAGATCTTTGTCAGAGAATGTCATTCATACAAATGGATGCGATGAATATGCAACAGAGAGACTCTGGGGCGATAAAAAGTACATAACCAATAGAGAAGACGAGACCATGAATCAAGACTTAGCAAGGCATGTAGAAAGAAGCTTCGGAGAGGCTTCTCCCAATGCAGCCATAGACAAATATATGAGAGATCGATATAATGAAAGCCGATGGGAGAGACAATCCTGTGAAAAAGAATCCGAGAACACCAGAGCTACTTTACAGAAGCAAACATCTAAACAAGATCCTAAAGGTAAAGGCTCAACAATCCAGAGACATGATTCTACTGCAAGCGACACATCACAGTCCGAGGTGAAACGAATTGTTCCACTGAAGCCTGAGCGGTCGAAGAAGTTGAAAGGCAGTAAAGGAGCCAAGCTGCAAGGACAACCAAGTGAGAAGAGCATTTCAGGATCATTTGATGAATGGGAAGGGACCAAGTCTAAAGAAGAGCAAGTTGGGTTCGATAATGCCCTGGATGGCTTTTTTCAGCACGGAAATTCTGCTGCTTTAGAAAGCACTGGAACTTTTTCCAAGCAAGACTGGATGAGTAATTGTCACAATAGGGAAGTCAGAGAATATAGCCGACAGTCTGTCCAAGACAGGCCCCAATTAAGAGATCTCAAGAACAGTGCAGACCACAGACTTAGTATCGAACAAGATCAGTTTCTTTTTGAAGATCCATTGTTTATGTTTGACTTTCCCACCAATTCAGCATTTCCAGCCTTTGACCAGATTCCCCCTTTATACCCACCTGTAAAATCCCAGAGGGCAAGAGATACACGTACCAAACCAATCACCAAAAGTGATTCTGGCAACAGTCTTCACAAGAGCTCCACCATGGAATCTTCCAAGAGGAAACCAGTGGAGCCCCTTCCCACTCCAGCAATTCATGCGGAGCCTCAGGAGGAAGCGCAGAGAGAGCCCTGGGAGAGACGCTTGGGATCAGTATCAGAAGATGACCCTGACCCAGACACTCTGTACCTGAAGGAGACTCACCTGGGCATTGAGCGCAAATGCTCGAGTATCACTGTTAGCTCAACATCTAGCCTGGAGGCTGAGGTGGACTTCACTGTGCTCATGGACTTCCAATCGGGTATTGAGGAATTTTCTAGAGGCATGACTGAGCTGGGGGAGAAAGACTTCTCACCTGAGTTTGGCTTCTCTGACCGTCCCACCCATCCAGCCTTTATACTGGGAGCAGATCCTATCTACCTTCCAGAAGAGAGACATGTAGAAGTTCAGAGGCCCGTAGAGAAACCAAAGCCCGTTGTAGAACAGAAGCCACCAGAGGAACGTAAACCGGAGGGCATCAAAGCAAAGCATGAAATTACATTGGAATTTGAGTTCATGATTGATGCTAATTCCATTCCATTTGATGCTGCCCTCCATAGTTCACCTTTTGTACCTAAGAAAGCTCCACGGTCAGTGAAAGCTGCCCAAGCCCTGAGGAAAGACTCTACAGAACAAGCTAATGCCCAGTCGATGAGAAGGGAGAGCTCTGAATCGCCCCCAATCCATCCTCTAAGCAGAGAGAGCAGTGAAATCATTGCCTCCCAAGCTCTAAGGAAGACCGAGGTCAAGATCGAGACGCAGCCCAATGGCTCTGAGGTCACCACAACCATAATGGAGATTGCAGACCCGGACCACGGTATTAGTGGTATGCGAGAGGCTGCATACTCTATGACAGAGAGAGTCTCTCCTGTGAACCTGGGATCATTAGGTAGAGATGGTTCTCCTCTAATGGTAACTGAGAATGTAACATCAGCCACTACAACGCATGTTACAAAGACGGTGAAAGGAGGCTACTCAGAGACAAGAATTGAAAAGAGGATTATCATTACCGGTGATGATGACGTCGATCAAGATCAGTCTAGGGAAGAGGAAGAGCCTCTTTTTCTGCTATTAACAGTGCAGCACTTCCAGGACCAGCTGCTCTCACGTGAACAGCCAAAGAGATTCTCCTGTGAACGGACATTGGAGAGCTTTGTAGAAGCACGGAAGATATTGTGATACTCTCTGATGACTGGCGATTTATTGACTGGTTCACCATGAGGATAACCATCCAATTTTAAGATGCCGTGAGAGCTAAATACACAAAAAATAAAGTTAAAATAAATAATATAAAGGACATAAATAAATAAAACAAATAAACATTGTCTTTGTAAACTTTTCAAACAGAGTTAAGTTCACTTTAACAGCATAAGTATTAGGGCTAGGACAATAAATCGATTCATCTCATTTCGTGGATCGACTCTGAGATTTTCCGAATGCATCTCAATTCTCTCTTGAATCGATTCTGAGCTTAGTTTTTAACAGTAGATGGCGCTCCAGGCTATTTTTTAACTGCACGCTCAAATGCTCACGAAGAAGAGTGTGGCTATATGTGGGCACCTCAGAATGCTTTCATGACAGAGATTAACATAAACAGCCCACTGCGAACACCCTTGCAATTCGCTTCAACCTTTTCGAATTTCATGAATGATTATTTTATAGAAGGTTCAAGTGGTGTGTGTAAAGAATTGGAAGCAAGCAGAGTACGGGTGTTTGTAAAGCACGCAGTGTCATCAGCTGTTAAAAACTAAGCTCAGTATCAGAATGCATTCGGAAAATCTCAGAATCGATCCAGAATCATTTTTTGATTCACGATTCAACAATTTATTGTCCCAGCCCTAATAATTATAGTCTTTGTACAGATATTGTTCTTTTCCACACAACAACACAATCCACATTGCTCACATACAATATAAATGAAAAACTTACTTCATTGGCTGTTTATTACCAAAGGAGAACTTAATCTTGCATCTGATGTCCTTTTAACTCCAGATGAGTAGAATATAAACAGTTAGAAATGTGGGAAAACTCTTCAACTTGCAATGCGGTGTAGACATCTTTCTTCCTGAGTCACTCTGTGCTTTTCATA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K06107 EPB41; erythrocyte membrane protein band 4.1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_02581650_02610697.mRNA True 4836 mRNA 0.46 21 2581650 2611607

Neighbor

gene id symbol gene type direction distance location
CI01000021_02495559_02501217 FAM217B coding upstream 79923 2495559 ~ 2501727 (+)
CI01000021_02402058_02447882 PHACTR3A coding upstream 133768 2401679 ~ 2447882 (+)
CI01000021_02378299_02383589 NA coding upstream 197890 2378044 ~ 2383760 (+)
CI01000021_02346223_02369457 NA coding upstream 210561 2346005 ~ 2371089 (+)
CI01000021_02331361_02334546 NA coding upstream 247028 2331150 ~ 2334622 (+)
CI01000021_02877008_02877864 NA coding downstream 264910 2876517 ~ 2878823 (+)
CI01000021_02930718_02985342 CNTN3A.2 coding downstream 319111 2930718 ~ 2985342 (+)
CI01000021_03044076_03086657 NA coding downstream 432469 3044076 ~ 3086657 (+)
CI01000021_03101146_03115161 RYBPA coding downstream 489346 3100953 ~ 3115468 (+)
CI01000021_03119361_03125084 EIF4E3 coding downstream 507754 3119361 ~ 3126781 (+)
G116277 NA non-coding upstream 2131 2543205 ~ 2579519 (+)
G116273 NA non-coding upstream 15002 2558740 ~ 2566648 (+)
G116324 NA non-coding upstream 41322 2540114 ~ 2540328 (+)
G116320 NA non-coding upstream 46086 2535088 ~ 2535564 (+)
G116243 NA non-coding upstream 173256 2405257 ~ 2408394 (+)
G117073 NA non-coding downstream 200876 2812483 ~ 2816693 (+)
G117031 NA non-coding downstream 206854 2818461 ~ 2839917 (+)
G117075 NA non-coding downstream 208982 2820589 ~ 2865155 (+)
G117137 NA non-coding downstream 256204 2867811 ~ 2868128 (+)
G117138 NA non-coding downstream 258348 2869955 ~ 2870327 (+)
G116236 NA other upstream 284455 2289817 ~ 2297195 (+)
CI01000021_01332646_01333910 NA other upstream 1247241 1331665 ~ 1333951 (+)
G115519 NA other upstream 2097686 480530 ~ 483964 (+)
G117237 NA other downstream 626247 3237854 ~ 3243364 (+)
G117202 NA other downstream 657537 3269144 ~ 3328233 (+)
G117484 NA other downstream 1344539 3956146 ~ 3957752 (+)
G117493 NA other downstream 1421393 4033000 ~ 4035676 (+)
CI01000021_04886787_04893309 PLAGL2 other downstream 2231126 4886337 ~ 4893474 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008211 NA coding CM030123.1 CM030123.1 45599200 ~ 45638789 (+)