CI01000021_02402058_02447882 (PHACTR3A)


Basic Information

Item Value
gene id CI01000021_02402058_02447882
gene name PHACTR3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2401679 ~ 2447882 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_02402058_02447882.mRNA
CTATAAAAAGCCCAAATGAATGAATTCATTTATGAAGCCGCTGTAAAAACGTCATGTGATAGCATCCTGTGATTCAGAACGGATGCTCGCTTGTCAGTGGGTCATTGTGGAGTGGATAAAGGTGGCATCTGCGCGCGCGCGTACACACACAAATACCCCAGCCCTTATGACAGACACACTCGGTCTCCCTCCCTCATGCACACACACACACACACACACACACACAGACACAGAGAGACACACACACACAGCCAGCCACTGTAAAGGGTTCTAATTCAGCATGCCTGCTGCTGGATGCTCCTAGACCGAGACACATCCGCCTCACCAGCGGGTTTGACTGCCTCCGAAAGGGATTTCAATATCTTATTCAGAGCTCCTCATGGCTTCATCGGATGGAATAGACAAATGTCTTCTGCACAGAGGCAGATCTCAAAGTGACCCGAACATCCTCAGCGAGTCTGGCATTGATCTCTCGCACAGCGCAGATGTGATGGAGCAGCAGAAAGTGCTGCGCTCCAGCTGTTTGGTGAGTGGAGTCCACACCCCTCCCATCCGGCGCCACAGCAAGCTGGCCACACTGGGGCGCATTTTCAGGCCGTGGAAATGGAGGAAAAAGAAAAACGAGAAGCTGAAGCAGAGCTCTACAGATGTGGCCTTGGCCTGTGGACTTCATTCTCCAGACCCCAGCTCTCCCATTCAGGGCATCTCCGATGCTGATATCCGGCTGCCTGGCTCTCAGGGGCCCATTCTTAGCATCAGTAGCATGGAGTACCTCAGCTCAGAGCAAGACAATCTCCCTACCATGGTAGATTCTGTACAGGACAACGAGACGATGGAAGAGACAAATTCAAATGAGGAAGAGGAGGAGGATGAGGAGGCAGTTCCCTCTGTAAATGAGAATGGAGATAAAGAACTGTCTAGAGTCCCTGACGGCCCAAGTCCTGTGGTTTTGAGAGGGCATTTTACTAATCCTGTGGGGTCGCCGCATATAGGTAGCATACATCCGCCGCTGCCCCCTAGCTGTATAATAGAAGAACTGCATCGAGCACTGGCAACAAAGCTCAGGCAGGAAAGCATTGAGCGAGAGCCAAGTGGAGATGGTGAGAACAGAAAGGAAGCTGAGGAAAACAAGGAAAATGTTCGACAAGACCACTGCTTCACTGACGCTTCAGGAATTATCTATGACATTGATGGCTGGAACGAGTCTGTCATTTCTGGCACATTGCCAAGGAGGATGAGGAAGGAGCTGCTGGCTGTAAAGCTTCGGAATCGTCCCAGCAAACAGGAGCTGGAAGACAGGAACATTTTTCCTGCGCGGAGTGACCAGGAGAGACAGGAGATCCGTCAACAGATCGAAATGAAACTTGCCAAGAGACTCAGTCAACGGCCGGCCGTTGAAGAGCTCGAGAGCAGAAATATTTTAAAACAGAGGAACGATCAGACGGAGCAAGAGGAAAGAAGAGAGATCAAACAGAGACTGAACAGAAAGCTCAACCAGAGGCCAACAGTTGATGAACTAAGAGAAAGAAAGATTCTCATCCGCTTCAGTGACTATGTGGAGGTGGCCAAAGCCCAGGATTATGACAGGAGAGCTGACAAACCCTGGACAAGACTGTCTGCTGCTGACAAG

Function

symbol description
phactr3a Predicted to enable actin binding activity. Predicted to be involved in actin cytoskeleton organization. Orthologous to human PHACTR3 (phosphatase and actin regulator 3).

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K17594 PHACTR; phosphatase and actin regulator

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_02402058_02447882.mRNA True 1630 mRNA 0.51 10 2401679 2447882

Neighbor

gene id symbol gene type direction distance location
CI01000021_02378299_02383589 NA coding upstream 17919 2378044 ~ 2383760 (+)
CI01000021_02346223_02369457 NA coding upstream 30590 2346005 ~ 2371089 (+)
CI01000021_02331361_02334546 NA coding upstream 67057 2331150 ~ 2334622 (+)
CI01000021_02322467_02328819 SNX21 coding upstream 71815 2322467 ~ 2329864 (+)
CI01000021_02269000_02272309 NA coding upstream 129283 2268689 ~ 2272396 (+)
CI01000021_02495559_02501217 FAM217B coding downstream 47677 2495559 ~ 2501727 (+)
CI01000021_02581650_02610697 NA coding downstream 133768 2581650 ~ 2611607 (+)
CI01000021_02877008_02877864 NA coding downstream 428635 2876517 ~ 2878823 (+)
CI01000021_02930718_02985342 CNTN3A.2 coding downstream 482836 2930718 ~ 2985342 (+)
CI01000021_03044076_03086657 NA coding downstream 596194 3044076 ~ 3086657 (+)
G116253 NA non-coding upstream 49899 2351521 ~ 2351780 (+)
G116246 NA non-coding upstream 95040 2306400 ~ 2306639 (+)
G116245 NA non-coding upstream 104112 2297335 ~ 2297567 (+)
G116231 NA non-coding upstream 116036 2285376 ~ 2285643 (+)
G116217 NA non-coding upstream 150394 2250984 ~ 2251285 (+)
G116320 NA non-coding downstream 87206 2535088 ~ 2535564 (+)
G116324 NA non-coding downstream 92232 2540114 ~ 2540328 (+)
G116277 NA non-coding downstream 95323 2543205 ~ 2579519 (+)
G116273 NA non-coding downstream 110858 2558740 ~ 2566648 (+)
G117073 NA non-coding downstream 364601 2812483 ~ 2816693 (+)
G116236 NA other upstream 104484 2289817 ~ 2297195 (+)
CI01000021_01332646_01333910 NA other upstream 1067270 1331665 ~ 1333951 (+)
G115519 NA other upstream 1917715 480530 ~ 483964 (+)
G117237 NA other downstream 789972 3237854 ~ 3243364 (+)
G117202 NA other downstream 821262 3269144 ~ 3328233 (+)
G117484 NA other downstream 1508264 3956146 ~ 3957752 (+)
G117493 NA other downstream 1585118 4033000 ~ 4035676 (+)
CI01000021_04886787_04893309 PLAGL2 other downstream 2394851 4886337 ~ 4893474 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location