G116246


Basic Information

Item Value
gene id G116246
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2306400 ~ 2306639 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU132012
ATCCAGTATTACATATCCGTGAGTGGCAAAAGTATGTGAAGCTCTAGGATTAGCAGTTAATTTGAAGGTGAATTTAGGCTTCACCTGTTCTTAAAGGGTTAGTTCACCCAAAAATAATAATGCCATTAATTACTCACCCTCATGTCGTTCCACACCCGTAAGACCTTCATTCATCTTCGGAACACAAATTAAGATATTTTTGATTAAATCCGATGGCTCAGTGAGGCCTGCATTCACAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132012 True 240 lncRNA 0.39 1 2306400 2306639

Neighbor

gene id symbol gene type direction distance location
CI01000021_02269000_02272309 NA coding upstream 34004 2268689 ~ 2272396 (+)
CI01000021_02230472_02252713 NA coding upstream 53254 2229991 ~ 2253146 (+)
CI01000021_01977248_01980449 NA coding upstream 325894 1976939 ~ 1980506 (+)
CI01000021_01771612_01785627 EXOSC10 coding upstream 520734 1771389 ~ 1785666 (+)
CI01000021_01717640_01718394 NA coding upstream 587521 1717640 ~ 1718879 (+)
CI01000021_02322467_02328819 SNX21 coding downstream 15828 2322467 ~ 2329864 (+)
CI01000021_02331361_02334546 NA coding downstream 24511 2331150 ~ 2334622 (+)
CI01000021_02346223_02369457 NA coding downstream 39366 2346005 ~ 2371089 (+)
CI01000021_02378299_02383589 NA coding downstream 71405 2378044 ~ 2383760 (+)
CI01000021_02402058_02447882 PHACTR3A coding downstream 95040 2401679 ~ 2447882 (+)
G116245 NA non-coding upstream 8833 2297335 ~ 2297567 (+)
G116231 NA non-coding upstream 20757 2285376 ~ 2285643 (+)
G116217 NA non-coding upstream 55115 2250984 ~ 2251285 (+)
G116216 NA non-coding upstream 57870 2248266 ~ 2248530 (+)
G116185 NA non-coding upstream 95697 2210464 ~ 2210703 (+)
G116253 NA non-coding downstream 44882 2351521 ~ 2351780 (+)
G116243 NA non-coding downstream 98618 2405257 ~ 2408394 (+)
G116320 NA non-coding downstream 228449 2535088 ~ 2535564 (+)
G116324 NA non-coding downstream 233475 2540114 ~ 2540328 (+)
G116277 NA non-coding downstream 236566 2543205 ~ 2579519 (+)
G116236 NA other upstream 9205 2289817 ~ 2297195 (+)
CI01000021_01332646_01333910 NA other upstream 971991 1331665 ~ 1333951 (+)
G115519 NA other upstream 1822436 480530 ~ 483964 (+)
G117237 NA other downstream 931215 3237854 ~ 3243364 (+)
G117202 NA other downstream 962505 3269144 ~ 3328233 (+)
G117484 NA other downstream 1649507 3956146 ~ 3957752 (+)
G117493 NA other downstream 1726361 4033000 ~ 4035676 (+)
CI01000021_04886787_04893309 PLAGL2 other downstream 2536094 4886337 ~ 4893474 (+)

Expression


Co-expression Network