G116277


Basic Information

Item Value
gene id G116277
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2543205 ~ 2579519 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU132094
ATTTGTGTTCTGAAGATGAACGAAGGTCTTATGTGTGTGGAACAACATGAGGGTGAGTAATTAATGACAAAAATTTTGGGGTGAACCCTTTAATGAGAGAGTCATCGAGTTATTCATTCATTCAGTAACGAAGGAAGTGGCTGTATTTATGAATGGGTCATTGAATCATTGACTCTCCCGATTTGTTCAAAGCCACATATTAGTTCAATAACGAAACACCACTCTGCTGCTGCTTTCATTGGAACTATTATTTCTTTTCAAAATAGAGCAAACAATACTGACAATACTGTGTTATCTATGTACATCACTTAATATTACCTTTTTGTTTGTTGAACTGTTAATATATTATCAACATTAAAAACAAGAACCCACACAGGGTATGTTTTTCTATCGAAGGGAGTTTGAGTCTTATTGATCTCTATGCACACAGTCTGTGTCGTAAAACATTTTCAGCTGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU132094 True 458 lncRNA 0.35 2 2543205 2579519

Neighbor

gene id symbol gene type direction distance location
CI01000021_02495559_02501217 FAM217B coding upstream 41478 2495559 ~ 2501727 (+)
CI01000021_02402058_02447882 PHACTR3A coding upstream 95323 2401679 ~ 2447882 (+)
CI01000021_02378299_02383589 NA coding upstream 159445 2378044 ~ 2383760 (+)
CI01000021_02346223_02369457 NA coding upstream 172116 2346005 ~ 2371089 (+)
CI01000021_02331361_02334546 NA coding upstream 208583 2331150 ~ 2334622 (+)
CI01000021_02581650_02610697 NA coding downstream 2131 2581650 ~ 2611607 (+)
CI01000021_02877008_02877864 NA coding downstream 296998 2876517 ~ 2878823 (+)
CI01000021_02930718_02985342 CNTN3A.2 coding downstream 351199 2930718 ~ 2985342 (+)
CI01000021_03044076_03086657 NA coding downstream 464557 3044076 ~ 3086657 (+)
CI01000021_03101146_03115161 RYBPA coding downstream 521434 3100953 ~ 3115468 (+)
G116324 NA non-coding upstream 2877 2540114 ~ 2540328 (+)
G116320 NA non-coding upstream 7641 2535088 ~ 2535564 (+)
G116243 NA non-coding upstream 134811 2405257 ~ 2408394 (+)
G116253 NA non-coding upstream 191425 2351521 ~ 2351780 (+)
G116246 NA non-coding upstream 236566 2306400 ~ 2306639 (+)
G117073 NA non-coding downstream 232964 2812483 ~ 2816693 (+)
G117031 NA non-coding downstream 238942 2818461 ~ 2839917 (+)
G117075 NA non-coding downstream 241070 2820589 ~ 2865155 (+)
G117137 NA non-coding downstream 288292 2867811 ~ 2868128 (+)
G117138 NA non-coding downstream 290436 2869955 ~ 2870327 (+)
G116236 NA other upstream 246010 2289817 ~ 2297195 (+)
CI01000021_01332646_01333910 NA other upstream 1208796 1331665 ~ 1333951 (+)
G115519 NA other upstream 2059241 480530 ~ 483964 (+)
G117237 NA other downstream 658335 3237854 ~ 3243364 (+)
G117202 NA other downstream 689625 3269144 ~ 3328233 (+)
G117484 NA other downstream 1376627 3956146 ~ 3957752 (+)
G117493 NA other downstream 1453481 4033000 ~ 4035676 (+)
CI01000021_04886787_04893309 PLAGL2 other downstream 2263214 4886337 ~ 4893474 (+)

Expression


Co-expression Network