CI01000026_11075931_11078249 (MDK, MDKA)


Basic Information

Item Value
gene id CI01000026_11075931_11078249
gene name MDK, MDKA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11075784 ~ 11079080 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_11075931_11078249.mRNA
ATATTAAAAGGGCAAAGTAACGTCTCAGCATAGATGGCTCGATTACTGTCCTGCCCTTTGATAATGGTACTTATGACAGAAATTGTTCATTTACTGAAAACTACAATTTAGCTCTGCAGCAGCTGATTAATCTGTGTGTTTTTCAGAATGCGTGGCCTGTTTTCCACCCTCATCGTTGTGCTGGTGGCCTTAATGATCGTGACTACAGAGGCTGGGAAAAACAAGAAAGAGAGGAATAGGGGGGTTAACGGTGGTGCGGACTGTGCGGAGTGGCGCTATGGCATCTGCGTGGCCAATAACGGAGACTGTGGACCAGGCATAAGGGAGGGCACCTGCAACGAGAATACCAAAAAACTCAAATGCAGAGTTCCCTGCAACTGGAAGAAAGAGTTTGGAGCTGACTGCAAGTATAAGTTTGGTAACTGGGGTGAGTGTGACGCAGCCACGAGCACAAAGAGCCGCACCGGCACTCTGCAAAAGGCTCTCTTCAACGTCGACTGTCAGCAAACCATCTCTGTGTCCAAACCCTGCACCACCAAGGTCAAAAACAAACCCAAAGGAAAGAAAAACAAGGGAAAAGGGAACTAAAGGGAGCAAGAGATCCAGAGGAGCAGTAAACACCACGTGATCATCCGTCATCCAGACACGGCCTTTTATATCTCTACTCAGTGTTCTTCAGCTTGAACGGGACTTGCTCTACAGCCACAAACACATAGCTTTAGAAGACTATGACAGAGTAACGTCTGAGTATTTGACACCTTACATGACTCTTTCATGTGTGAGGGAGAGGGGAGA

Function

symbol description
mdka Predicted to enable growth factor activity. Acts upstream of with a positive effect on positive regulation of mitotic cell cycle. Acts upstream of or within neural tube formation; regulation of cell cycle; and sensory epithelium regeneration. Located in Golgi apparatus. Is expressed in several structures, including brain; eye; neural tube; neuroectoderm; and paraxial mesoderm. Human ortholog(s) of this gene implicated in brain ischemia. Orthologous to human MDK (midkine).
mdk Enables heparan sulfate binding activity and heparin binding activity. Involved in several processes, including negative regulation of apoptotic process; positive regulation of cell migration; and regulation of leukocyte cell-cell adhesion. Colocalizes with collagen-containing extracellular matrix. Implicated in brain ischemia. Biomarker of endometriosis.

GO:

id name namespace
GO:0070654 sensory epithelium regeneration biological_process

KEGG:

id description
K06828 MDK; midkine

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_11075931_11078249.mRNA False 795 mRNA 0.47 4 11075784 11078456

Neighbor

gene id symbol gene type direction distance location
CI01000026_11032284_11063044 NA coding upstream 12159 11031679 ~ 11063625 (+)
CI01000026_11012960_11021926 NA coding upstream 53858 11011340 ~ 11021926 (+)
CI01000026_10955581_10955874 NA coding upstream 119871 10954814 ~ 10955913 (+)
CI01000026_10930798_10950198 CREB3L1 coding upstream 125471 10930798 ~ 10950313 (+)
CI01000026_10917489_10918872 NA coding upstream 156588 10915851 ~ 10919196 (+)
CI01000026_11203781_11212074 NA coding downstream 125325 11203781 ~ 11212582 (+)
CI01000026_11239339_11240254 TNNI2A.4, TNNI2B.2, TNNI2B.1 coding downstream 160883 11239339 ~ 11240433 (+)
CI01000026_11241496_11246081 NA coding downstream 163040 11241496 ~ 11246204 (+)
CI01000026_11262923_11264188 TNNI2A.4, TNNI2B.2, TNNI2B.1 coding downstream 182625 11261081 ~ 11264534 (+)
CI01000026_11266022_11278889 NA coding downstream 187566 11266022 ~ 11278899 (+)
G133426 NA non-coding upstream 168109 10907475 ~ 10907675 (+)
G133420 NA non-coding upstream 180625 10886053 ~ 10895159 (+)
G133406 NA non-coding upstream 290222 10784792 ~ 10785562 (+)
G133383 NA non-coding upstream 447708 10552960 ~ 10628076 (+)
G133373 NA non-coding upstream 560136 10515420 ~ 10515648 (+)
G133442 NA non-coding downstream 40255 11118711 ~ 11119022 (+)
G133443 NA non-coding downstream 41192 11119648 ~ 11119877 (+)
G133444 NA non-coding downstream 42053 11120509 ~ 11120750 (+)
G133454 NA non-coding downstream 65853 11144309 ~ 11153397 (+)
G133491 NA non-coding downstream 114905 11193361 ~ 11193825 (+)
G133192 NA other upstream 913823 10159819 ~ 10161961 (+)
G132667 NA other upstream 1506624 9568739 ~ 9569160 (+)
G131077 NA other upstream 2568997 8501408 ~ 8506787 (+)
CI01000026_08297901_08307596 CTRB1 other upstream 2776370 8297857 ~ 8307629 (+)
G130967 NA other upstream 2886711 8188374 ~ 8189073 (+)
G133542 NA other downstream 397661 11476117 ~ 11477544 (+)

Expression


Co-expression Network