G128097


Basic Information

Item Value
gene id G128097
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 4112623 ~ 4118181 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU145543
ATGACTGTATTACACTGGTTTAGGGTAGCTGTGTTCGCCCTGGTGTGTCGGTTAGAACACAGGAGGCATGAATATGAATCAACAGTCTTTAGTTCAGCAATGATCAGCACAGTGAACAGCACAGCCAGACCACAGGGCATTGCTTGGCATTATCTTCACAATAATGATATGTGAGGTTACTGTACAGGAGTAGGCATAGGTGTGGTATGTTGTCATTAACGCACAACTTGAACACATATCATCCTCAACCAAGCAAAGTTAAATTCAGTCCGTATTCTGGCGAGACCTAGGTGGGGTACTTCATGCGATCAGCT
>TU145544
ATGACTGTATTACACTGGTTTAGGGTAGCTGTGTTCGCCCTGGTGTGTCGGTTAGAACACAGGAGGCATGAATATGAATCAACAGTCTTTAATTAGTTCAGCAATGATCAGCACAGTGAACAGCACAGCCAGACCACAGGGCATTGCTTGGCATTATCTTCACAATAATGATATGTGAGGTTACTGTACAGGAGTAGGCATAGGTGTGGTATGTTGTCATTAACGCACAACTTGAACACATATCATCCTCAACCAAGCAAAGTTAAATTCAGTCCGTATTCTGGCGAGACCTAGGTGGGGTACTTCATGCGATCAGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU145543 False 314 lncRNA 0.45 2 4112623 4118181
TU145544 True 318 lncRNA 0.44 2 4112623 4118181

Neighbor

gene id symbol gene type direction distance location
CI01000026_04062224_04065987 SLC7A6OS coding upstream 46195 4062224 ~ 4066428 (+)
CI01000026_03725294_03727306 NA coding upstream 385212 3725294 ~ 3727411 (+)
CI01000026_03664983_03686916 TUB coding upstream 425277 3664983 ~ 3687346 (+)
CI01000026_03554511_03560631 RRAS2, RRAS2.L coding upstream 551708 3554511 ~ 3560915 (+)
CI01000026_03497917_03504607 COPB1, COPB coding upstream 608016 3497917 ~ 3504607 (+)
CI01000026_04172127_04176264 NA coding downstream 53708 4171889 ~ 4176428 (+)
CI01000026_04209762_04249320 CCDC102A coding downstream 91211 4209392 ~ 4250297 (+)
CI01000026_04327206_04331151 DOK4, DOK5 coding downstream 209025 4327206 ~ 4332085 (+)
CI01000026_04333601_04341386 NA coding downstream 215420 4333601 ~ 4341491 (+)
CI01000026_04344703_04357534 GFOD2, COG4 coding downstream 226522 4344703 ~ 4357660 (+)
G128096 NA non-coding upstream 1198 4111221 ~ 4111425 (+)
G127743 NA non-coding upstream 75779 4034857 ~ 4036844 (+)
G127754 NA non-coding upstream 113059 3998464 ~ 3999564 (+)
G128039 NA non-coding upstream 164562 3947821 ~ 3948061 (+)
G127762 NA non-coding upstream 441742 3670488 ~ 3670881 (+)
G128082 NA non-coding downstream 6579 4124760 ~ 4127399 (+)
G128079 NA non-coding downstream 14775 4132956 ~ 4159889 (+)
G128084 NA non-coding downstream 21970 4140151 ~ 4164016 (+)
G128156 NA non-coding downstream 141882 4260063 ~ 4260290 (+)
G128162 NA non-coding downstream 152998 4271179 ~ 4271446 (+)
G127979 NA other upstream 349637 3752551 ~ 3762986 (+)
CI01000026_02659356_02660297 NA other upstream 1451794 2658605 ~ 2660829 (+)
G127519 NA other upstream 1685617 2393683 ~ 2427006 (+)
G127531 NA other upstream 1800488 2309322 ~ 2312135 (+)
G127500 NA other upstream 2166184 1931183 ~ 1946439 (+)
G128137 NA other downstream 312381 4430562 ~ 4431201 (+)
CI01000026_04556074_04556964 FOXB1B, FOXB1, FOXB1A other downstream 437595 4555776 ~ 4557613 (+)
G128585 NA other downstream 1831632 5949813 ~ 5950122 (+)
G128601 NA other downstream 1865698 5983879 ~ 5991761 (+)

Expression


Co-expression Network