CI01000027_04206424_04209369


Basic Information

Item Value
gene id CI01000027_04206424_04209369
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4205610 ~ 4209445 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_04206424_04209369.mRNA
AGTGAACTGAAATGCTGCAAATTATTCTACTTCTCCTGCCTGGTGTTCTCACTCTCAGTGATGAGTGGAATGTGAATTATCCTCCACCGATCTGTGCTGCGAGGGGATCCAATGTCACTATTGCCTGTACATTTAAATATCCATCTGCGCAAGCTAAAACAGAAACACCCACAGTCTCCACAAACCCAGAGGAAACAGAAGATGTGCTGCACGAGGTGCAATATGTATCTGTCAACATTCAACCCAAAGAACTGCTTCAAATGTCTGCCAACACAGAGCAGGAGAATGATTCATCCATCTACAGCACAGTGATCTTATACTTTCAGCAGTGAAGATACAGATGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGGGTGTGCGTGTGCGTGTGGGTGTGGGTGTGTGCGTGCGGGTGTGTGTGTACGTGCATCCAGGCGAGTGAGTGAGTGAGGGAGTGAGGCCCTATTTACACCTGGTTTAAGATTAGTTTTGGTCGATCGGATTACAAGTAGACAAGGGAGACACATTCCTTTTTACACCTGGGGCCAATACCATGAAACCAGGTATGTTTCAGTTTAGTTTATCCCAACCCTGGGTTTTAGGCACCATAAAAGTGGCTCAGCTTTTAGCTGTGTTCCACGCCATAGTAACTTGTGCTCCACAGCTAACCTGCTCCAGGGCAGGTTATGTTCTAGGTTAGAGATTTCAATTGGACCAATCAGATGTGAGCAAAGTAACACATCTATGATGCAATAAAGTCTCTCCCCAGTTTTCAGTTCTTCAAATTTAAGGTCACTACATAGCAAAAGATTTTTAAATAAAAAAAATCTGTATATTGTAATCATTATGTTGTCATACACATTTACTTCAGTTAGCTCATTTTTGCTGGCAGCCTAAACATAGCCCTAGACCTATTTTTTTGAATGGATGTCAATGTCTTTCTTTGGCTTTCAGGTTTTACCAGTTATGATAAGACTTTTTATAACTGCATCTATGCATATGACGCTGATATTATGTATTTTAATGAAATAATGAATAATTTAATTATTAATATTGTGTTACATCTTATGTTGTTTAATGAAAATAAA
>TU160731
CTTTCATTCAGTCTTTTTTCATACAGTGACATAAAAACATCTTCTGTAAGCCAAATAACTGAAACAGTGAACTGAAATGCTGCAAATTATTCTACTTCTCCTGCCTGGTGTTCTCACTCTCAGTGATGAGTGGAATGTGAATTATCCTCCACCGATCTGTGCTGCGAGGGGATCCAATGTCACTATTGCCTGTACATTTAAATATCCATCTGCGCAAGTAC

Function

NR:

description
uncharacterized protein LOC100142634 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_04206424_04209369.mRNA False 1146 mRNA 0.41 4 4205610 4209380
TU160731 True 221 lncRNA 0.40 2 4208654 4209445

Neighbor

gene id symbol gene type direction distance location
CI01000027_04156256_04198063 NEK11 coding downstream 7547 4156256 ~ 4198063 (-)
CI01000027_04039778_04040714 NA coding downstream 164896 4039109 ~ 4040714 (-)
CI01000027_04008272_04011121 NA coding downstream 192988 4008180 ~ 4012622 (-)
CI01000027_03969492_03973741 NA coding downstream 231434 3968698 ~ 3974176 (-)
CI01000027_03922380_03931033 NA coding downstream 274577 3922242 ~ 3931033 (-)
CI01000027_04233680_04249553 SCAP coding upstream 24262 4233642 ~ 4249553 (-)
CI01000027_04254645_04264857 NA coding upstream 44787 4254167 ~ 4264857 (-)
CI01000027_04324807_04339354 NA coding upstream 115296 4324676 ~ 4339354 (-)
CI01000027_04401843_04403095 S100A11, S100T, S100S coding upstream 192110 4401490 ~ 4403095 (-)
CI01000027_04419264_04422151 NA coding upstream 208727 4418107 ~ 4422380 (-)
G141429 NA non-coding downstream 36904 4168392 ~ 4168706 (-)
G141421 NA non-coding downstream 47008 4158354 ~ 4158602 (-)
G141405 NA non-coding downstream 82190 4122321 ~ 4123420 (-)
G141402 NA non-coding downstream 85083 4120320 ~ 4120527 (-)
G140370 NA non-coding downstream 92781 4112596 ~ 4112829 (-)
G141461 NA non-coding upstream 54522 4263902 ~ 4264722 (-)
G141470 NA non-coding upstream 72125 4281505 ~ 4281829 (-)
G141471 NA non-coding upstream 72529 4281909 ~ 4282135 (-)
G141475 NA non-coding upstream 80894 4290274 ~ 4290481 (-)
G141513 NA non-coding upstream 153469 4362849 ~ 4363235 (-)
CI01000027_03787377_03788902 NA other downstream 416388 3787377 ~ 3790279 (-)
G140118 NA other downstream 620931 3509352 ~ 3584679 (-)
CI01000027_02226447_02227499 NA other downstream 1977585 2225781 ~ 2227499 (-)
CI01000027_02119227_02124423 NA other downstream 2079582 2119131 ~ 2125142 (-)
G141481 NA other upstream 162867 4372247 ~ 4412810 (-)
G141488 NA other upstream 298095 4507475 ~ 4508971 (-)
G141728 NA other upstream 667687 4877067 ~ 4877766 (-)
G141588 NA other upstream 898955 5108335 ~ 5201155 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other upstream 1239946 5447424 ~ 5450461 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010171 sc:d156 coding NC_007127.7 CM002900.2 41162854 ~ 41169589 (+)