CI01000029_02583370_02587687 (SERINC1.L, SERC1, SERINC1, SERINC1.S)


Basic Information

Item Value
gene id CI01000029_02583370_02587687
gene name SERINC1.L, SERC1, SERINC1, SERINC1.S
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2583370 ~ 2587697 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_02583370_02587687.mRNA
ATTCCTTGTCTTTGTGGCAGCGCTCCTTGCCTGCTGTGCGGATGCTGCCCAAGTGGAAACAACTCTACTGTCACTCGGCTGATCTATGCCTTCTTCATGCTGATGGGTGTGGGCATTGCTTGCATCATGCTCATGCCAGGCATGGAGGGGCATCTGAAGAAGATTCCAGGCTTTTGTGAAGGAGGAACGGGGTCGTCCATCCCAGGAGTTGAAGGTCACGTGAACTGTGATGTGCTGGTTGGGTATAAGGCTGTGTATCGTGTGTGCTTTGGAATGGCCATGTTCTTCCTGCTCTTCTCTCTCATCATGGTAAAGGTCAAGAGCAGCCAGGACCCAAGAGCCGCTGTGCATAACGGGTTTTGGTTCTTCAAGTTTGCAGCTGCCACTGCTATTACAGTCGGAGCGTTCTTTATTCCTGAAGGCCCTTTTACTACTGTCTGGTTTTACGTAGGCATGGCTGGAGCATTCTGTTTTATCCTCATCCAGCTGGTGCTCTTGATCGACTTCGCTCACTCTTGGAACGAGTCCTGGGTGGAAAAAATGGAGGAGGGAAACTCCCGCTGCTGGTATGCAGCTCTTCTGTCTGCCACAGCCATCAACTATGCTTTGTCCCTGATGTCTCTGGTCTTGTTCTATGTGTATTACACTCACTCTGATGGCTGCACTGAGAACAAAGTCTTCATCAGCATCAACATGCTGCTGTGCGTTGGTGCATCTGTCATGTCCATCTTGCCTAAGATTCAGGAGTCCCAGCCCAGGTCTGGTCTCTTACAGTCCTCCATTGTTACCCTGTACACCATGTATCTGACCTGGTCTGCCATGACCAATGAACCTGAACGCAGATGCAACCCTAGCTTGCTTGGAATTATTGGCCTCAACAGCACCAGCCCTGCTGGTCAGGACCGTGTTGTTCAATGGTGGGATGCCCAGGGCATTGTGGGGTTGATCTTGTTCCTGTTGTGTGTTCTGTACTCCAGCATCCGCAACTCCAGCAATGCTCAGGTAAACAAACTGACCCTCACCAGCGACGAGTCCGCTCTAATCGAGGATGGTCCCGCTCCAGAGAACTTTGAAGTGAGCGATGGCACCAACCGTGCCATTGACAACGAGAAGGATGGGGTCACCTACAGCTATTCTTTCTTCCACTTCATGCTCTTCTTGGCTTCCCTGTACATCATGATGACATTGACAAACTGGTACAGCCCTGACTCAAGCTATGAGACCATGACCAGCAAATGGCCGTCTGTGTGGGTGAAGATCACCTCTAGCTGGATCTGCATCTCTCTGTACGTGTGGACCCTGGTGGCTCCGCTGGTCCTCACCAACCGTGACTTCGACTGAAAAGATGGAA

Function

symbol description
serinc1 Predicted to act upstream of or within phosphatidylserine metabolic process and sphingolipid metabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in female organism and nervous system. Orthologous to human SERINC1 (serine incorporator 1).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_02583370_02587687.mRNA True 1351 mRNA 0.51 9 2583370 2587697

Neighbor

gene id symbol gene type direction distance location
CI01000029_02488613_02490983 NA coding upstream 92343 2488350 ~ 2491371 (+)
CI01000029_02445216_02480549 NA coding upstream 102706 2444973 ~ 2480664 (+)
CI01000029_02432238_02441531 NA coding upstream 141781 2432238 ~ 2441589 (+)
CI01000029_02427134_02429596 NA coding upstream 153275 2426098 ~ 2430095 (+)
CI01000029_02343103_02352351 NA coding upstream 230588 2340949 ~ 2352782 (+)
CI01000029_02684591_02727897 NA coding downstream 94822 2682519 ~ 2728167 (+)
CI01000029_02750295_02751549 NA coding downstream 160285 2747982 ~ 2751558 (+)
CI01000029_02772065_02813214 TBC1D32 coding downstream 184368 2772065 ~ 2814491 (+)
CI01000029_02860076_02868432 NA coding downstream 271212 2858909 ~ 2868937 (+)
CI01000029_02904113_02950205 NA coding downstream 316083 2903780 ~ 2951323 (+)
G152374 NA non-coding upstream 55207 2527816 ~ 2528163 (+)
G152373 NA non-coding upstream 55995 2527075 ~ 2527375 (+)
G152359 NA non-coding upstream 93857 2489088 ~ 2489513 (+)
G152281 NA non-coding upstream 98424 2482385 ~ 2484946 (+)
G152402 NA non-coding downstream 16707 2604404 ~ 2604932 (+)
G152421 NA non-coding downstream 20574 2608271 ~ 2608578 (+)
G152424 NA non-coding downstream 22833 2610530 ~ 2610754 (+)
G152426 NA non-coding downstream 26294 2613991 ~ 2614283 (+)
G152432 NA non-coding downstream 35785 2623482 ~ 2623909 (+)
CI01000029_01526863_01527414 NA other upstream 1055471 1526754 ~ 1527899 (+)
G151495 NA other upstream 2211448 366541 ~ 371922 (+)
G151415 NA other upstream 2358125 170521 ~ 225245 (+)
G152451 NA other downstream 173897 2761594 ~ 2762939 (+)
G153475 NA other downstream 957428 3545125 ~ 3562004 (+)
G153790 NA other downstream 2145892 4733589 ~ 4740107 (+)
G154587 NA other downstream 2683323 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 2869544 5461497 ~ 5470346 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00004318 serinc1,LOC107598085,LOC107716862,LOC107675084 coding CM030121.1 CM030121.1 42732816 ~ 42736569 (+)