G161056


Basic Information

Item Value
gene id G161056
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 5956443 ~ 5956929 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU182835
AATTTCCCGTTTAATTTCGACATGATTTTGATAAAATAAATATAATACATTTTACACAGATTTGATTTATACCATAATTTGAGAAATGGAAAATTATATGTAAAGGCAGTCTCTGTGGGATTTCAGTCACACATTCAAGGGAAGAGGTCAAACAAAGGTCTCACAAGGATGTCTGCTTTAGGTCTGTCTTAGGAATCACCCCCCTTTGGCGTTAACTCATGATCTTCCTTTTCATCAAAAGTGATAGTAAAGTCAATTATAATGTTACAAAAGATTTCTTTACAAATCAAAGAGTCCTAAAAAAAATGTATCGTGGTTTCCACGATACAAAGTACAAAGCACAATGTTATTCACCATTCCTGATTTATAACACACACTCACAGCGTTTGGCCGGTCTTGTGGCTGTCAGAGCAGAAACAATAAGCTGCTCTCTGTATGTTTTTCCGTTATCTCCGGAAGCATTCATATATAAATTGTGCAAGCTTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182835 True 487 lncRNA 0.35 1 5956443 5956929

Neighbor

gene id symbol gene type direction distance location
CI01000030_05801355_05807277 NA coding downstream 149166 5801321 ~ 5807277 (-)
CI01000030_05791222_05793350 NA coding downstream 163093 5791053 ~ 5793350 (-)
CI01000030_05784109_05788689 NA coding downstream 167754 5783816 ~ 5788689 (-)
CI01000030_05561747_05564633 NA coding downstream 391733 5561747 ~ 5564710 (-)
CI01000030_05519604_05542781 NA coding downstream 413636 5519546 ~ 5542807 (-)
CI01000030_05996557_05996952 NA coding upstream 39097 5996026 ~ 5997542 (-)
CI01000030_06042392_06063112 VTG1, VTG7, VTG6, VTG4 coding upstream 85325 6042254 ~ 6063126 (-)
CI01000030_06070218_06078371 VTG1 coding upstream 113213 6070142 ~ 6078378 (-)
CI01000030_06079733_06090776 NA coding upstream 122762 6079691 ~ 6090776 (-)
CI01000030_06092897_06102203 NA coding upstream 135911 6092840 ~ 6102631 (-)
G161072 NA non-coding downstream 5664 5950561 ~ 5950779 (-)
G161069 NA non-coding downstream 7942 5947692 ~ 5948501 (-)
G161068 NA non-coding downstream 9710 5946435 ~ 5946733 (-)
G161067 NA non-coding downstream 10331 5945839 ~ 5946112 (-)
G161064 NA non-coding downstream 18554 5937656 ~ 5937889 (-)
G161052 NA non-coding upstream 1059 5957988 ~ 5961136 (-)
G161050 NA non-coding upstream 6241 5963170 ~ 5964150 (-)
G161083 NA non-coding upstream 18629 5975558 ~ 5978788 (-)
G161088 NA non-coding upstream 47614 6004543 ~ 6005636 (-)
G161089 NA non-coding upstream 49616 6006545 ~ 6006901 (-)
G160949 NA other downstream 156017 5797297 ~ 5800426 (-)
G160712 NA other downstream 444369 5456960 ~ 5512074 (-)
G160713 NA other downstream 532930 5419119 ~ 5423513 (-)
CI01000030_03491770_03493119 CELF5A other downstream 2463343 3490119 ~ 3493741 (-)
CI01000030_06131710_06138371 NA other upstream 176446 6131090 ~ 6138406 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 744126 6701055 ~ 6704745 (-)
CI01000030_06747047_06752255 NA other upstream 786329 6746960 ~ 6752411 (-)
G163065 NA other upstream 967554 6924483 ~ 6925657 (-)
G163139 NA other upstream 1192545 7149474 ~ 7150144 (-)

Expression


Co-expression Network