CI01000034_03151977_03170691


Basic Information

Item Value
gene id CI01000034_03151977_03170691
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3151382 ~ 3170738 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_03151977_03170691.mRNA
ATATTTAAAGAGCAGATGAATTGCTTCAGGGTGCACTCAGACCCAAATCTGCAACAGTTCTAAAAGAAAATTGAAAAATGTAAGAAAGTTTTTACAATTAGATGAGTAGCTATATTTATTGGAAGTGTGTTGTCTCTTAGGGTGTGACTTCCTGAGCATGGCCTTTGCTTACACAATTCTGTGTCTTATCTGCTGTCACTTCTGAAAATACTCCTCCTTTTTGTCTATTTTTAGGTGTTCTCAAATTACTTTTTTTTTTTTCTTTTTTTTTTGGTACATTAGCATTTTTAATTTCTGTACTATAATGTAGATTCATTGAACGGCATAGCTGGGTGTTCATTTAAAATGACAAATTCTTCATAATACATACCACAAAACACTTACTGAGCATCCAGGAAACCCATGAGACGTATCTCATTTATCTGAAGGAAGCACATCTAAAACAAACACCCACAAGTGTCATATTAACTCCAATAACCACAGAGTAGTATAAGGAGTTGTACAGACCTCTCCCAAAGGGACAGAATAACTTCTTCCTAGTGGCAGACAGAATTGTGTAGAACGACTTTGGACGACTCAAAAAATCTCACAGAACATGGAGAAAAGGCTGGAAGTCAGTCTGCTGTTTTTTACTGGATATTTGTTCATATTCATGTATCCAAATCACATCAGTGGCTTTAACCTGGATCTGAACAAATACACCGTCTTCTCTGGCCCTGAGGACAGCTACTTTGGTTTCTCAGTCGACTTTTATCAGTCAAGCAGCAAAAGTATAAGTGTGGTGGTTGGAGCACCCAGAGCAAACACCAGCCAGCCTGGGATCTCTCATGGCGGCTCTGTCTTCATGTGTCCCTGGACATCAAGCGGAGAATCGTGTCAGACATTAAACTTTGACCAAAAAGGTGATGAAAACATCACGTTTGGTAACATGCTCCTAATGGCTCACAAATCAAACCAGTGGCTGGGCGCTTCAGTTCGAACCTACAACAACTTCATCTTGGCCTGTGCCCCTATGTTTCACTGGAACGTGCTTTTGGAAAAAGAGGAGGCCATGAATACACCTGTTGGGAACTGCCAGCTTTTGAACATGCAAACAGGAGAGTTGGCAAACTACGCCCCCTGCAGGGAAGAATATGTAGAGTCGATTTACACCAGAGGCTGTCATATCATCACTGCATCTCTTGCAAACATCATGAGAAGTGGCAGCACGTTCTCTCCCAAGCACTCAGTGAGCGGTGAGACCAAAACACCACAAAGACTTGACTACTACGACCTGTATCTGGATTATGTCGTTGGGGTCCCAAACGATCTGCACACTGCAGGCTCTGTCAAAATAATAAACGCTGCAACAGTGCCTCTGCAAATCATGAAGGCGATTAGTGGCACCCAGATAGCATCTTATTTTGGGCATTCTGTGGCAGTAACAGATATTAACAAAGATGGGTGGGACGACATCCTGATTGGAGCGCCGCTTTTTATGGAGCAGCTGTCCAATCAGAAATTTCGAGAAGTGGGACAAGTATATGTTTACCTGCAAAGAAAGGGCTTCTTCTTCTCCTCCAGGCCCAACCAGATGCTGACAGGGACATATGCCTATGGGCGTTTTGGCAGCGCTATCGCCCCTTTGGGAGACATCGACCATGATGGGTTTAATGATGTAGCTGTGGGGGCACCTGGCTCTGGTGAAGGGGGTCAAGTGTTTATTTACCTTGGTCAGAGTGATGGTTTGACCACCCAGTATGTTCAAGTAATTGAGAGCCCATTTCGCACCCTCAAAGATCCTCCAATGTTTGGCTTCAGCATAAGAGGAGGGACAGATATTGATGATAATGGCTATCCAGATCTCATCATTGGTGCTTGGGGTGCGAGCAAAGTGGCAACTTACAGAGCACAAGCTGTAGTGAGGACACAGGCTCGACTCTCATTCTTCCCTGAACTTTTGAACCCCGAAGACAAATTCTGCCAACTCCACCAGAGCAGCACCTTCATTACTTGCTTTGTAATAATGGCATGCATCAGTGTATCCGGACACAGAATTCCTGAGGAGATTGTGCTCAACACTGAGCTTCAGCTGGACAGGATGAAGCAGAACATGGCCAGACGAACCCTCCTACTGGACTCCAACCAGCCATACACATACTTCCAACTCACGGTGCAAAGAAACTCTGGAGATGTCTGTAGGAACTTCACGGCCTACCTATTGCCTGAGTTTAAGGACAAGTTAAGTCCAATCTTCTTCTCGGTGAACTACAGCCTGGCTGACTCCCAAGATGCAGTGCTGCATGGACAAAGTGTCGCTGTTGGACAGACAAGGATAATACTAAACTGTGGTCATGATAACATCTGTATTCCAGACCTGAAGCTGAAAGCAGTAGCGTCAACAGAACCAATCCTGATCGGCGATGAGAATCCAGCGCTGCTGATTATCGAGGCCGAAAATCAGGGAGAGGGAGCTTACGAGACTGAGCTATATATCAGCCCGCCAGCACACACACACTATCAGGGTGTTGTGAGCAACCGGCAGGACTTCAGTCACTTGGTTTGTGGTCAGAAGAAGGAGAACGGCTCAGTCATTGTGGTTTGTGATCTAGGAAACCCCATGGAGGGTGGACATCAGCTGAAAGCAGGTCTTTACTTCAGCATGGGTGGCCTGGAACAAGTGGAGAACCACATCACATTCCAAATGCAAATACGAAGTAAGAACAGTCAGAACCCAGACAGTAACCTGGTCCAATTACAGGTTAATGTTAATGCTGCAGCTTCCCTGGAGATGCGTGGAGTCTCTTCTCCTGTTGACTGTGTCCTGCCTATTGCTAAATGGGAGCCAAAGGATTATCCAGAAGACATAAATGAAGTAGGCCCACTCGTAGAGCATGTATATGAGCTAAGAAACATGGGTCCTAGTCCGGTCAATGCAAAGCTTACACTGGAGTTTCCTGTCTCACAAAATGAGTCCTATCTGCTGTATGTGTTTGCTAATGCCTCCCAAGAACTCATCTCCTGTCAAACAGACTACTCCAACATCGACCCACGTGGGAACTGCTCTAGTGGTGACCAATGTCTTCTGTTTGAGTGTGAGGCTGCGGGACTGCAGAGAGATGAGAGGGCCATTGTAAGAGTGATGAGTAGGCTGTGGGTACAAACCTTCTTAAAGAGACCATATGTAAATTACGTTCTTCACTCCACGGCTCACTATGAGGTGAAAGATGTGCCCTCAAAAATCCAGCCAGTTGTCTTGCCCAGAGGAAAAGCACAGGTGGGATTTTTCAAGCGTAACCGTCCTCCAAGTGACGATGATGGTGATGACACGCAGCACCTGAATGGTGACCAGAACGAGATGTCAGACTGCAAATCTTGAGATTTATGATGTTTTAAAGCTTTTTAAACTTTGTTTGCTATATTATA

Function

NR:

description
Integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_03151977_03170691.mRNA True 3405 mRNA 0.45 25 3151382 3170738

Neighbor

gene id symbol gene type direction distance location
CI01000034_03145811_03149071 NA coding upstream 2311 3145625 ~ 3149071 (+)
CI01000034_02957414_02963572 NA coding upstream 187351 2957095 ~ 2964031 (+)
CI01000034_02770255_02774341 NA coding upstream 376815 2770099 ~ 2774567 (+)
CI01000034_02688043_02705526 MAPTB coding upstream 445818 2687945 ~ 2705564 (+)
CI01000034_02662209_02664649 MYL4 coding upstream 485842 2662209 ~ 2665540 (+)
CI01000034_03195900_03212503 FAM171A2 coding downstream 24570 3195308 ~ 3212685 (+)
CI01000034_03214677_03229150 SYNGR1, SYNGR1A coding downstream 43477 3214215 ~ 3229868 (+)
CI01000034_03235135_03236084 TCAP coding downstream 64188 3234926 ~ 3236590 (+)
CI01000034_03273191_03285382 NA coding downstream 101682 3272420 ~ 3294805 (+)
CI01000034_03312399_03327633 TAOK2A, TAOK2, TAOK2B, TAOK2.L coding downstream 141661 3312399 ~ 3328593 (+)
G170263 NA non-coding upstream 12326 3138803 ~ 3139056 (+)
G170260 NA non-coding upstream 19962 3131137 ~ 3131420 (+)
G170165 NA non-coding upstream 89354 3061481 ~ 3062028 (+)
G170073 NA non-coding upstream 265781 2881891 ~ 2885601 (+)
G170066 NA non-coding upstream 306295 2844834 ~ 2845087 (+)
G170244 NA non-coding downstream 75008 3245746 ~ 3249130 (+)
G170274 NA non-coding downstream 87052 3257790 ~ 3258069 (+)
G170276 NA non-coding downstream 89044 3259782 ~ 3260036 (+)
G170280 NA non-coding downstream 110668 3281406 ~ 3283172 (+)
G169806 NA other upstream 813692 2317973 ~ 2337690 (+)
CI01000034_01729413_01730790 EVE1 other upstream 1420205 1729413 ~ 1731179 (+)
G169340 NA other upstream 1840504 1250219 ~ 1310878 (+)
G169394 NA other upstream 1957822 1150297 ~ 1193560 (+)
G169357 NA other upstream 2032363 1053543 ~ 1119019 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L other downstream 263398 3432846 ~ 3438839 (+)
CI01000034_04125435_04125780 RPRML other downstream 954362 4125100 ~ 4126825 (+)
CI01000034_04192675_04200041 NA other downstream 1023900 4192311 ~ 4200636 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026299 itga2b coding NC_007114.7 CM002887.2 21350509 ~ 21382491 (-)