G170165


Basic Information

Item Value
gene id G170165
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3061481 ~ 3062028 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU193340
TATCACCCTGTAGCCCAAGACTGGTTGCCCACTGAAGCTAAGCAGGGCTGAGCCTGGTTAGTACCTGGATGGGAGACCTCCTGGGAAAACTAGGTTGCTGCTGGAAGAGGTGTTTGTGAGGCCAGCAGGGGGTGCTCACCCTGTGGTCTGTGTGGGTCCTAACACCCCAGTATAGTGATGGGGACACTATACTGTCAAAAAAAGTACCGTCTTTCGGATGAGACGTTAAACCGAGGTCCTGACTCTCTGTGGTCGTTAAAAATCCCAGGATGTCCTTCGAAAAGAGTAGGGGTGTTACCCCGACATCCTGGCCACATTTGCCCATTGGCCTCTGTCCATCATGGCCTCCTAATCATCCCCATATACTGATTGGCTTCATCACTCTGTCTCCTCTCCACCAATAAGCTGGTGTGTGGTGGGCGTTCTGGCGCAATATGGCTGCCGTTGCATCATCCAGGTGGATGCTGCACATTGGTGGTGGTTGAGGAGATCCCCCCTTCCATATGTAAAGCGCTTTGAGTACCCAGAAAAGCGCTATATAAAATGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193340 True 548 lncRNA 0.52 1 3061481 3062028

Neighbor

gene id symbol gene type direction distance location
CI01000034_02957414_02963572 NA coding upstream 97450 2957095 ~ 2964031 (+)
CI01000034_02770255_02774341 NA coding upstream 286914 2770099 ~ 2774567 (+)
CI01000034_02688043_02705526 MAPTB coding upstream 355917 2687945 ~ 2705564 (+)
CI01000034_02662209_02664649 MYL4 coding upstream 395941 2662209 ~ 2665540 (+)
CI01000034_02563086_02564052 NA coding upstream 497309 2562938 ~ 2564172 (+)
CI01000034_03145811_03149071 NA coding downstream 83597 3145625 ~ 3149071 (+)
CI01000034_03151977_03170691 NA coding downstream 89354 3151382 ~ 3170738 (+)
CI01000034_03195900_03212503 FAM171A2 coding downstream 133280 3195308 ~ 3212685 (+)
CI01000034_03214677_03229150 SYNGR1, SYNGR1A coding downstream 152187 3214215 ~ 3229868 (+)
CI01000034_03235135_03236084 TCAP coding downstream 172898 3234926 ~ 3236590 (+)
G170073 NA non-coding upstream 175880 2881891 ~ 2885601 (+)
G170066 NA non-coding upstream 216394 2844834 ~ 2845087 (+)
G170050 NA non-coding upstream 237365 2823711 ~ 2824116 (+)
G170047 NA non-coding upstream 240191 2821060 ~ 2821290 (+)
G170043 NA non-coding upstream 245682 2815573 ~ 2815799 (+)
G170260 NA non-coding downstream 69109 3131137 ~ 3131420 (+)
G170263 NA non-coding downstream 76775 3138803 ~ 3139056 (+)
G170244 NA non-coding downstream 183718 3245746 ~ 3249130 (+)
G170274 NA non-coding downstream 195762 3257790 ~ 3258069 (+)
G170276 NA non-coding downstream 197754 3259782 ~ 3260036 (+)
G169806 NA other upstream 723791 2317973 ~ 2337690 (+)
CI01000034_01729413_01730790 EVE1 other upstream 1330304 1729413 ~ 1731179 (+)
G169340 NA other upstream 1750603 1250219 ~ 1310878 (+)
G169394 NA other upstream 1867921 1150297 ~ 1193560 (+)
G169357 NA other upstream 1942462 1053543 ~ 1119019 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L other downstream 372108 3432846 ~ 3438839 (+)
CI01000034_04125435_04125780 RPRML other downstream 1063072 4125100 ~ 4126825 (+)
CI01000034_04192675_04200041 NA other downstream 1132610 4192311 ~ 4200636 (+)

Expression


Co-expression Network