RNA id: TU193340


Basic Information

Item Value
RNA id TU193340
length 548
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G170165
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3061481 ~ 3062028 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATCACCCTGTAGCCCAAGACTGGTTGCCCACTGAAGCTAAGCAGGGCTGAGCCTGGTTAGTACCTGGATGGGAGACCTCCTGGGAAAACTAGGTTGCTGCTGGAAGAGGTGTTTGTGAGGCCAGCAGGGGGTGCTCACCCTGTGGTCTGTGTGGGTCCTAACACCCCAGTATAGTGATGGGGACACTATACTGTCAAAAAAAGTACCGTCTTTCGGATGAGACGTTAAACCGAGGTCCTGACTCTCTGTGGTCGTTAAAAATCCCAGGATGTCCTTCGAAAAGAGTAGGGGTGTTACCCCGACATCCTGGCCACATTTGCCCATTGGCCTCTGTCCATCATGGCCTCCTAATCATCCCCATATACTGATTGGCTTCATCACTCTGTCTCCTCTCCACCAATAAGCTGGTGTGTGGTGGGCGTTCTGGCGCAATATGGCTGCCGTTGCATCATCCAGGTGGATGCTGCACATTGGTGGTGGTTGAGGAGATCCCCCCTTCCATATGTAAAGCGCTTTGAGTACCCAGAAAAGCGCTATATAAAATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193247 lncRNA upstream 175880 2881891 ~ 2885601 (+) True G170073
TU193240 lncRNA upstream 216394 2844834 ~ 2845087 (+) True G170066
TU193224 lncRNA upstream 237365 2823711 ~ 2824116 (+) True G170050
TU193221 lncRNA upstream 240191 2821060 ~ 2821290 (+) True G170047
TU193217 lncRNA upstream 245682 2815573 ~ 2815799 (+) True G170043
TU193436 lncRNA downstream 69109 3131137 ~ 3131420 (+) True G170260
TU193439 lncRNA downstream 76775 3138803 ~ 3139056 (+) True G170263
TU193420 lncRNA downstream 183718 3245746 ~ 3249130 (+) True G170244
TU193453 lncRNA downstream 195762 3257790 ~ 3258069 (+) True G170274
TU193455 lncRNA downstream 197754 3259782 ~ 3260036 (+) True G170276
CI01000034_02957414_02963572.mRNA mRNA upstream 97450 2957095 ~ 2964031 (+) True CI01000034_02957414_02963572
CI01000034_02770255_02774341.mRNA mRNA upstream 286914 2770099 ~ 2774567 (+) False CI01000034_02770255_02774341
CI01000034_02688043_02705526.mRNA mRNA upstream 355917 2687945 ~ 2705564 (+) True CI01000034_02688043_02705526
CI01000034_02662209_02664649.mRNA mRNA upstream 395941 2662209 ~ 2665540 (+) True CI01000034_02662209_02664649
CI01000034_02563086_02564052.mRNA mRNA upstream 497309 2562938 ~ 2564172 (+) True CI01000034_02563086_02564052
CI01000034_03145811_03149071.mRNA mRNA downstream 83597 3145625 ~ 3149071 (+) True CI01000034_03145811_03149071
CI01000034_03151977_03170691.mRNA mRNA downstream 89354 3151382 ~ 3170738 (+) True CI01000034_03151977_03170691
CI01000034_03195900_03212503.mRNA mRNA downstream 133280 3195308 ~ 3212685 (+) True CI01000034_03195900_03212503
CI01000034_03214677_03229150.mRNA mRNA downstream 152187 3214215 ~ 3229868 (+) True CI01000034_03214677_03229150
CI01000034_03235135_03236084.mRNA mRNA downstream 172898 3234926 ~ 3236590 (+) True CI01000034_03235135_03236084
TU192920 other upstream 723791 2317973 ~ 2337690 (+) True G169806
TU192663 other upstream 1330304 1726510 ~ 1726632 (+) True G169586
TU192378 other upstream 1750603 1250219 ~ 1310878 (+) True G169340
TU192449 other upstream 1867921 1150297 ~ 1193560 (+) True G169394
TU192400 other upstream 1942462 1103540 ~ 1119019 (+) True G169357
TU193348 other downstream 372108 3434136 ~ 3451849 (+) True G170172
TU193699 other downstream 1063072 4125100 ~ 4126811 (+) True CI01000034_04125435_04125780
TU193723 other downstream 1132610 4194638 ~ 4194993 (+) True G170522

Expression Profile