G199130


Basic Information

Item Value
gene id G199130
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 6577980 ~ 6594210 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU226000
GTTCTGACCAACTGAGAAAAAAATCAACCTAAAAGCATTAGGCCTACAATAATTGCGCTGCCAACGCTGATTAAATCTAATGTTAGCTTAGCTCATATTACGTCAAACCGTGCAAATTATTATTACTGTTATACTTTGTTCTCGAAGTGTGTATTAGTGTGTATTGGCGTTACCTGTAGATTTTAATTTCTGTAGCCACTCCACAGTCCGAAGTCTTTTGCTTTTTGTCTACGGGTGAATCTCCAGTTGTCACTGATGATTGTCATTTGAACCTTTCTGGATTACAATCCGCCATCAAAATGATAAGTTTAATTATTCCAGCTGCTGTGAGAAAACGCTATAAATGATCCACTACCAGCAGCATCCTCACATATAGCCTACTAGCTGGGACTCCTTCTTTCTGTTTACAGACGTGATGTAATGACGCAAAGACGAACGGCTCCATGCTTGAATTTCCAGCGGAAACCCACCAGAACCCATTTTATCATAAAACATTATTACAAGCTTACCGTTGTGACTCGGGCTACGGTAAGGAGATAGTTTTGAACACTGGCTGGTAATGTACTTGCTCAAAAATTGATTTTGGATCATTTTAAACCAAAAAAGTTACGGACTGCAGATTTAATCAACAAATTGAAAAAAATTTAACTCAAAAGTGTGATTTGTTCATGAATCGGTCGGTCATTGTTAATTGCTTCATGTCTTCAAAAATTCACATTCTGAGTTGCACGGATGAAAATCATACAAACGTGGAGTATTGAGGAGGCGTGACTTGTAGCATGAGAACTCAATCCACTGTTCGCAGTATAAGGAGGTGTTTGCTAGGGCAGTGACTTCATCCCAGGATGCATTTACATACTGGATGTCCCCAATATAAGGTCGATCCACAGTGGAGCCGCTCACCTTGGTGCTTTTCATGCGGTTGTGCTCGATGACAGTCCATGATTTTTGCAACATATTGCAGTAGACTGTGAAAGGCTTCAGTGGTCCGCTCAGATCTGGATCTATAGTGTAGTTTCCTGACCAGTACTTCCCATTCAGTCTGTAGGCCTCACATGACTCCCTGTAGACAGAGTTATGACAAACCTCCCCCTTGTACCCTGTGTTGTTACACACACATAAGAAATCATTCCAGGACTGAATACACCTGCCTTCGTGTTCACATGGGTTTGGAGTGCACCTATCAGTGATTCCGCAGGTGCCCAGCAGGATTTCGGCGTATCTGCCCCATTTTCTCTGCAGCATGACATCTATATCAACCGGCTCATCATCTATAAAGATCTGCTGCATGCAGCCATGGAAGCGAGACAGCTTGGTCACACAGCGAGCCGTGTTATTGGTCTTAGGACAACCCCCAAAGAAGTAGCGGTCTCCTGTACGAACCATAAAGGGGTTGGTGATCTTTAGTGGTGAGCTCTCATCTTCATCTATAGTGATAGTTAGTAAGTTGTCTTTGGCGGTCAGGTCTACCGTGTGCCAGAAGCCGTCATTGAGACGGTACCCTGCAGCAAAGCGTAATCTCTTGTTTCCAGGCTGCATGAGAGTGATGTTCACCTGTCCTTCACTGAGGCCAAGCTCCAGAGAGCCCAAATCATCTGCAAACCTGGTGAACATCAGTAACCCTGTGTAGTCCCATGAGCGGAACTTAAATTTTACCGCTAGACGGTTCTTCCGGAAGAACCCAGGCAGCTGCAGGTAGTTGTTGGGCCCTGCAAAGGTCATGGGCTTCCAGAGGAGGTCACGGCAGGTATAATGCATCTTTTTCTTTTTAGGAGCTAGTCGAATTTCAGGCTCCTGGTACTGTGTCTTGTAGATGATATTGATTCCATTGATAAAGACATTCTCCATGCAGCCACGGAAGTTAACCTTACCAGGCAGGTGGGGCGTGTCTTTCTCAATCACACCGCCAACATAAATCTGTTTGTCCAGATCAAGGTACTTGAACTCTCCGTTAAGGACAGCAGTCTCAGTCTGTCCATCCAGGGTAAAGTTAACCTCTCGCCCGTAACGCTTGATGGTGACGTAGTGCCAATGCTGTGTGTCCAGCAGGTTTCCCAGCATCATTGTGGTCATCCCATTGGTGTTATGGACTGTGCTGCTCCCCAGGCTGATGTGTAAGTAGAGGCGTCCAGTCTTTAGTTCCAGAGTGGCAGAGTCTCCCTGCAGACCCTCACTGTGCAGGAGAATACCATCCTTCTCCAAGGTCTTAAAATTCAAAGCGTAGTGGTCCTGAAGTGTCCTCATCCTGCCTTGTGGGAATGAGTATGCCACCATGTCATCCCCCTCAAACTGCATCACATATGAATCGTAAGGACAGCCGTAGAGCTCTACGCGCAGGCCAATTTTGCCTCCGTTCTCAGTATTCCAGCCCATGGGATAGATGCGCAGATGTTTGGCAGTGAACGCATAATGAAAGACGTTCCTCTTCACCTGGTAGTAATTCCAGTTGCCAGGCAACGTCATGTTTCCTCCTTTCATGACATATGGAGTCCACGTGTCGAATCGATCCCCGTACAGCAGCATGTATTTGGTGATCCAGTCATAAGAGTTGAAGGTACCCTGAGTAGCAATGGCCATGATACGATACTTCCTCCCCAAGTCAATCTGCATCCATGGCTGCCTGTCCCGAGGGGAAGGAGACCAGCCGCTGCTCCCATACAGTTTGGCAAAGTGTGCGGAGTAAAAAAAGTTATATCTGGAAGAAGCATGGAAAGAGGACGCATAGAGAGGAGAAATCAGCGGATCTAAGCATGGCCGTGACGAGCAATGCTGAAAGGCGAGAAAGAGTAAAAGGCTTGGGGCAAGAATTTTGATATCCATCCTCTCCGGAAGACGGAGTCGATTTTAGATGAGTAAATCAAATGTTATCCTCTCCTCGTCACCGAACAGTACAGCATCGTTTAGCCGTCCTTTCGGCCAACTTTAACTCACTCAGCCGGGATGGCGATAGATTCGCT
>TU225999
ATTTACTCGTGTATTTTTCTTTCTTTAATAATATTAAACACAACCATATAGACAAATTTTAAAAGTTATTTTAAAAGGTATCTTTAAAGTCATTTTTTCTCATCTCAGTCTCACCATTGGCGGTAGTCGGCATCACAGTTGCACCAGTACTTGGAGTCAGTGCAAGTTTGATTGACAGCACATCCACATTTTCCACTTTCAGGGAAAGCTCCTCCCCAGTATTCATGACTCTCATTATGCCGACCAATCCAGTAAGTGACTTGTAGCATGAGAACTCAATCCACTGTTCGCAGTATAAGGAGGTGTTTGCTAGGGCAGTGACTTCATCCCAGGATGCATTTACATACTGGATGTCCCCAATATAAGGTCGATCCACAGTGGAGCCGCTCACCTTGGTGCTTTTCATGCGGTTGTGCTCGATGACAGTCCATGATTTTTGCAACATATTGCAGTAGACTGTGAAAGGCTTCAGTGGTCCGCTCAGATCTGGATCTATAGTGTAGTTTCCTGACCAGTACTTCCCATTCAGTCTGTAGGCCTCACATGACTCCCTGTAGACAGAGTTATGACAAACCTCCCCCTTGTACCCTGTGTTGTTACACACACATAAGAAATCATTCCAGGACTGAATACACCTGCCTTCGTGTTCACATGGGTTTGGAGTGCACCTATCAGTGATTCCGCAGGTGCCCAGCAGGATTTCGGCGTATCTGCCCCATTTTCTCTGCAGCATGACATCTATATCAACCGGCTCATCATCTATAAAGATCTGCTGCATGCAGCCATGGAAGCGAGACAGCTTGGTCACACAGCGAGCCGTGTTATTGGTCTTAGGACAACCCCCAAAGAAGTAGCGGTCTCCTGTACGAACCATAAAGGGGTTGGTGATCTTTAGTGGTGAGCTCTCATCTTCATCTATAGTGATAGTTAGTAAGTTGTCTTTGGCGGTCAGGTCTACCGTGTGCCAGAAGCCGTCATTGAGACGGTACCCTGCAGCAAAGCGTAATCTCTTGTTTCCAGGCTGCATGAGAGTGATGTTCACCTGTCCTTCACTGAGGCCAAGCTCCAGAGAGCCCAAATCATCTGCAAACCTGGTGAACATCAGTAACCCTGTGTAGTCCCATGAGCGGAACTTAAATTTTACCGCTAGACGGTTCTTCCGGAAGAACCCAGGCAGCTGCAGGTAGTTGTTGGGCCCTGCAAAGGTCATGGGCTTCCAGAGGAGGTCACGGCAGGTATAATGCATCTTTTTCTTTTTAGGAGCTAGTCGAATTTCAGGCTCCTGGTACTGTGTCTTGTAGATGATATTGATTCCATTGATAAAGACATTCTCCATGCAGCCACGGAAGTTAACCTTACCAGGCAGGTGGGGCGTGTCTTTCTCAATCACACCGCCAACATAAATCTGTTTGTCCAGATCAAGGTACTTGAACTCTCCGTTAAGGACAGCAGTCTCAGTCTGTCCATCCAGGGTAAAGTTAACCTCTCGCCCGTAACGCTTGATGGTGACGTAGTGCCAATGCTGTGTGTCCAGCAGGTTTCCCAGCATCATTGTGGTCATCCCATTGGTGTTATGGACTGTGCTGCTCCCCAGGCTGATGTGTAAGTAGAGGCGTCCAGTCTTTAGTTCCAGAGTGGCAGAGTCTCCCTGCAGACCCTCACTGTGCAGGAGAATACCATCCTTCTCCAAGGTCTTAAAATTCAAAGCGTAGTGGTCCTGAAGTGTCCTCATCCTGCCTTGTGGGAATGAGTATGCCACCATGTCATCCCCCTCAAACTGCATCACATATGAATCTGTTAATGTCAAAGGTCAAGAGTATGGAGAGGGTTGTTAAAAACTGTATTACAAAATTCTATTTATGCTAGAAACCAAACACAAAATATACAAGCCACTGTGTCTGGCTGTTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU226000 False 2957 TUCP 0.46 14 6577980 6592925
TU225999 True 1910 lncRNA 0.46 10 6588177 6594210

Neighbor

gene id symbol gene type direction distance location
CI01000046_06471554_06479199 ENGASE coding downstream 108686 6471085 ~ 6479491 (-)
CI01000046_06460451_06464009 COIL coding downstream 123842 6460451 ~ 6464335 (-)
CI01000046_06456550_06456910 NA coding downstream 131051 6454928 ~ 6457126 (-)
CI01000046_06399300_06413564 RAB11FIP4A, RAB11FIP4 coding downstream 174613 6398667 ~ 6413564 (-)
CI01000046_06349776_06359655 SUZ12A coding downstream 226909 6349245 ~ 6361268 (-)
CI01000046_06619452_06652257 GNA13, GNA13.S coding upstream 24956 6619166 ~ 6652257 (-)
CI01000046_06664434_06673031 COG1 coding upstream 69350 6663560 ~ 6673535 (-)
CI01000046_06676701_06682877 ROGDI coding upstream 81769 6675979 ~ 6684823 (-)
CI01000046_06685686_06699338 GLYR1 coding upstream 91120 6685330 ~ 6699338 (-)
CI01000046_06702303_06713022 PPL coding upstream 107598 6701808 ~ 6713022 (-)
G199128 NA non-coding downstream 16156 6571716 ~ 6572021 (-)
G199126 NA non-coding downstream 18210 6569560 ~ 6569967 (-)
G199121 NA non-coding downstream 31144 6556699 ~ 6557033 (-)
G199119 NA non-coding downstream 33423 6554547 ~ 6554754 (-)
G199106 NA non-coding downstream 135400 6452375 ~ 6452777 (-)
G199139 NA non-coding upstream 13645 6607855 ~ 6611084 (-)
G199157 NA non-coding upstream 105581 6699791 ~ 6701035 (-)
G199196 NA non-coding upstream 142118 6736328 ~ 6736528 (-)
G199201 NA non-coding upstream 152750 6746960 ~ 6755212 (-)
G199209 NA non-coding upstream 170242 6764452 ~ 6767009 (-)
G199014 NA other downstream 212771 6364178 ~ 6375406 (-)
G199054 NA other downstream 490503 6097359 ~ 6097674 (-)
G198265 NA other downstream 2788076 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 3720383 2866070 ~ 2867794 (-)
G196463 NA other downstream 4419533 2168266 ~ 2168644 (-)
G199181 NA other upstream 232475 6826685 ~ 6830453 (-)

Expression


Co-expression Network