rnaseh2a (rnaseh2a,LOC107747423,LOC107583201,LOC107594406,LOC107757040,LOC107676270)


Basic Information

Item Value
gene id rnaseh2a
gene name rnaseh2a,LOC107747423,LOC107583201,LOC107594406,LOC107757040,LOC107676270
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14377681 ~ 14383553 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931678.2
TCACGCGCATTTTCCCGGGCTTGGGTGCTtcaaccaatcacagtccagctCTCTAGCTTCAGGCTGCAGCGAGGATCTTGTGGAAATAGAGCAGACATTACCCAGCCATGGACCTGACGGACTTTGAGGCGGATAATTCGGTCAGTTGTcgcctgtcctgtcctgtccctGACCTCTGCAGGACTGAAGACTGCTGTCTGGGCATCGACGAGGCCGGCAGAGGTCCTGTCCTGGGTCCCATGGTGTATGGAATATGTTTCTGTCCTGTGTCCAAAAAGGAGGACCTGAAGAACCTGAAAGTGGCAGACTCGAAGACGCTGAgcgaggcagagagagagaatctgttTCTGAAGCTGGACGAGGCCAAGAGCTTTGTGGGCTGGGCTCTTCAGGTCCTCTCACCCAATACCATCTCCACTAGCATGttacagagGGCGAAGTATAATTTAAACGCTCTGTCTCATGATGCTGCTATCGGGCTGGTGCAGTACGCTCTGGACTGCGGAGTGCAGCTCAAAGAGGTGTTTGTAGACACAGTTGGCCCGGCGGAGAAGTACGAGGAGAAACTGTCTCAGCGTTTTCCCGGAGTGAAGGTGACCGTACGGCCCAAAGCTGACTCGCTCTTCCCCATCGTCAGCGCCGCCAGCATCTGCGCCAAGGTGGCTCGAGACCATGCAGTGAAAGGCTGGAAGTTCACAGAAGATCTAGGTGAAGTGGACACCGATTACGGCTCAGGATACCCCAACGacCCAAAGACTAAGAGCTGGCTGTTGAAGTATCTGGACCCGGTGTTTGGATATCCGCAGTTTGTGCGTTTCAGCTGGAGCACAGCACAGACTCTACTGGACAGCAAAGCGGTGCCTGTGCACTGggacgACGACGAGGAGGACGGAGAGAAAGCAGCAGCTCGACAGAATAACACGTCCATGTTGTCATACTTCAGCCGCAGCAAACCTGccggcaacacacacacacgagagacACACCGCTTCTTCACCGAGCGTAGATTACAGAGCATCgacacactctgaacacacagacGCACAGTGTAGTCATGCgtgcgtatacacacacacacactcacacacacacgcgcacgcacacactgtCGACTGTGAAGCAACAGCGCTCTGTGAAGGTCTTCTGGAAatttttgtgttgtatttttttaaacaattttcttAATGTTCgagtaataaaatgtatattttatacattaa
>XM_026931679.2
TTGATATCACTATAATTGGTTGCGAGCGGCGCTTGAAAATGACGTCACGCGCATTTTCCCGGGCTTGGGTGCTtcaaccaatcacagtccagctCTCTAGCTTCAGGCTGCAGCGAGGATCTTAAATAGAGCAGACATTACCCAGCCATGGACCTGACGGACTTTGAGGCGGATAATTCGGTCAGTTGTcgcctgtcctgtcctgtccctGACCTCTGCAGGACTGAAGACTGCTGTCTGGGCATCGACGAGGCCGGCAGAGGTCCTGTCCTGGGTCCCATGGTGTATGGAATATGTTTCTGTCCTGTGTCCAAAAAGGAGGACCTGAAGAACCTGAAAGTGGCAGACTCGAAGACGCTGAgcgaggcagagagagagaatctgttTCTGAAGCTGGACGAGGCCAAGAGCTTTGTGGGCTGGGCTCTTCAGGTCCTCTCACCCAATACCATCTCCACTAGCATGttacagagGGCGAAGTATAATTTAAACGCTCTGTCTCATGATGCTGCTATCGGGCTGGTGCAGTACGCTCTGGACTGCGGAGTGCAGCTCAAAGAGGTGTTTGTAGACACAGTTGGCCCGGCGGAGAAGTACGAGGAGAAACTGTCTCAGCGTTTTCCCGGAGTGAAGGTGACCGTACGGCCCAAAGCTGACTCGCTCTTCCCCATCGTCAGCGCCGCCAGCATCTGCGCCAAGGTGGCTCGAGACCATGCAGTGAAAGGCTGGAAGTTCACAGAAGATCTAGGTGAAGTGGACACCGATTACGGCTCAGGATACCCCAACGacCCAAAGACTAAGAGCTGGCTGTTGAAGTATCTGGACCCGGTGTTTGGATATCCGCAGTTTGTGCGTTTCAGCTGGAGCACAGCACAGACTCTACTGGACAGCAAAGCGGTGCCTGTGCACTGggacgACGACGAGGAGGACGGAGAGAAAGCAGCAGCTCGACAGAATAACACGTCCATGTTGTCATACTTCAGCCGCAGCAAACCTGccggcaacacacacacacgagagacACACCGCTTCTTCACCGAGCGTAGATTACAGAGCATCgacacactctgaacacacagacGCACAGTGTAGTCATGCgtgcgtatacacacacacacactcacacacacacgcgcacgcacacactgtCGACTGTGAAGCAACAGCGCTCTGTGAAGGTCTTCTGGAAatttttgtgttgtatttttttaaacaattttcttAATGTTCgagtaataaaatgtatattttatacattaa
>XM_026931680.2
GGACTGAAGACTGCTGTCTGGGCATCGACGAGGCCGGCAGAGGTCCTGTCCTGGGTCAGGAAATTCTTCATTAAGCTCTGCCTGTTATTGCTTATTAAACTGCTGGTCCCATGGTGTATGGAATATGTTTCTGTCCTGTGTCCAAAAAGGAGGACCTGAAGAACCTGAAAGTGGCAGACTCGAAGACGCTGAgcgaggcagagagagagaatctgttTCTGAAGCTGGACGAGGCCAAGAGCTTTGTGGGCTGGGCTCTTCAGGTCCTCTCACCCAATACCATCTCCACTAGCATGttacagagGGCGAAGTATAATTTAAACGCTCTGTCTCATGATGCTGCTATCGGGCTGGTGCAGTACGCTCTGGACTGCGGAGTGCAGCTCAAAGAGGTGTTTGTAGACACAGTTGGCCCGGCGGAGAAGTACGAGGAGAAACTGTCTCAGCGTTTTCCCGGAGTGAAGGTGACCGTACGGCCCAAAGCTGACTCGCTCTTCCCCATCGTCAGCGCCGCCAGCATCTGCGCCAAGGTGGCTCGAGACCATGCAGTGAAAGGCTGGAAGTTCACAGAAGATCTAGGTGAAGTGGACACCGATTACGGCTCAGGATACCCCAACGacCCAAAGACTAAGAGCTGGCTGTTGAAGTATCTGGACCCGGTGTTTGGATATCCGCAGTTTGTGCGTTTCAGCTGGAGCACAGCACAGACTCTACTGGACAGCAAAGCGGTGCCTGTGCACTGggacgACGACGAGGAGGACGGAGAGAAAGCAGCAGCTCGACAGAATAACACGTCCATGTTGTCATACTTCAGCCGCAGCAAACCTGccggcaacacacacacacgagagacACACCGCTTCTTCACCGAGCGTAGATTACAGAGCATCgacacactctgaacacacagacGCACAGTGTAGTCATGCgtgcgtatacacacacacacactcacacacacacgcgcacgcacacactgtCGACTGTGAAGCAACAGCGCTCTGTGAAGGTCTTCTGGAAatttttgtgttgtatttttttaaacaattttcttAATGTTCgagtaataaaatgtatattttatacattaa

Function

symbol description
rnaseh2a Predicted to enable RNA-DNA hybrid ribonuclease activity. Predicted to be involved in DNA replication, removal of RNA primer and mismatch repair. Predicted to act upstream of or within RNA metabolic process. Predicted to be part of ribonuclease H2 complex. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome. Orthologous to human RNASEH2A (ribonuclease H2 subunit A).

NR:

description
PREDICTED: ribonuclease H2 subunit A

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0004523 RNA-DNA hybrid ribonuclease activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K10743 RNASEH2A; ribonuclease H2 subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931678.2 False 1220 mRNA 0.52 9 14377725 14383553
XM_026931679.2 True 1260 mRNA 0.52 9 14377681 14383553
XM_026931680.2 False 1091 mRNA 0.51 8 14378329 14383553

Neighbor

gene id symbol gene type direction distance location
LOC113537357 NA coding upstream 2101 14374566 ~ 14375580 (+)
junba junb coding upstream 37253 14338742 ~ 14340428 (+)
LOC113537615 crgm2,LOC108258879,LOC108260578,LOC108260581,LOC108260584,LOC108260664,LOC108260582,LOC108260580,LOC108441183,LOC108427435 coding upstream 196685 14174892 ~ 14180996 (+)
LOC113537635 NA coding upstream 250388 14121038 ~ 14127293 (+)
LOC113537316 NA coding upstream 293027 14075086 ~ 14084654 (+)
snrpb2 snrpb2,LOC107684252,LOC107676294 coding downstream 2671 14386224 ~ 14390230 (+)
prokr1a LOC108258526,LOC108441199 coding downstream 11539 14395092 ~ 14407949 (+)
LOC113537569 fbxo48 coding downstream 47394 14430947 ~ 14434006 (+)
cnrip1a cnrip1a,LOC108258529,LOC108441258,LOC107676313,LOC107594460,LOC107684253,LOC107583248 coding downstream 52395 14435948 ~ 14441294 (+)
ppp3r1b PPP3R1,ppp3r1,LOC108441257,LOC107727894,LOC106024317,LOC107699153 coding downstream 58951 14442504 ~ 14465728 (+)
G375931 NA non-coding upstream 16641 14360720 ~ 14361040 (+)
LOC117596176 NA non-coding upstream 48980 14327369 ~ 14328701 (+)
LOC113537225 NA non-coding upstream 110070 14247687 ~ 14267611 (+)
G375774 NA non-coding upstream 173322 14203675 ~ 14204359 (+)
G375771 NA non-coding upstream 185381 14190898 ~ 14192300 (+)
G375955 NA non-coding downstream 97668 14481221 ~ 14481519 (+)
G375970 NA non-coding downstream 135436 14518989 ~ 14522534 (+)
G375973 NA non-coding downstream 170284 14553837 ~ 14630233 (+)
G375976 actr2,LOC108423375,LOC104930021,LOC106577324 non-coding downstream 177118 14560671 ~ 14566658 (+)
G375961 LOC108258536 non-coding downstream 198698 14582251 ~ 14589137 (+)
LOC113537358 LOC108258898,LOC108258899 other upstream 17077 14358742 ~ 14360604 (+)
G375711 tpt1,LOC107734570,LOC107598740 other upstream 335067 14023250 ~ 14042614 (+)
gpalpp1 gpalpp1 other upstream 356550 14016523 ~ 14021131 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other upstream 2251486 12109571 ~ 12126195 (+)
LOC113537724 sept3 other upstream 3309679 11062016 ~ 11068002 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 696134 15079687 ~ 15099905 (+)
smdt1b NA other downstream 730914 15114467 ~ 15116878 (+)
jag1a jag1 other downstream 982246 15365799 ~ 15400404 (+)
G376467 NA other downstream 1037846 15421399 ~ 15424798 (+)
G376488 slc9a3r2 other downstream 1107493 15491046 ~ 15492575 (+)

Expression


Co-expression Network