RNA id: XM_043256286.1


Basic Information

Item Value
RNA id XM_043256286.1
length 3836
RNA type mRNA
GC content 0.49
exon number 12
gene id trim9
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14315230 ~ 14333812 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTTCACCAGTTTGATTGGACTCCTGGAGCTCTTCGCGTAAACTGACAGCGATTTTATGCAGTAGCTGTTGTCGCTCGTGCATCAGTGTTGGGTTTGGCCTACGCCCACCGAATTTAAACCGCCCCCTCCTCTATCCTCCGGTGCATAGGACGGAGAACGCGAAGGAGACGCGTACGTACAGAGCTGCGATACGGAGGGAATATTTCGTTTTCGTTTACAGGGAGCCTCCGAACCCGGATCGAACGACAAGATGGACGAAATGGAAGAGGAGTTAAAGTGCCCGGTGTGCGGCTCGTTTTTCCGCGAGCCGATCATCCTGCCGTGCTCGCATAATATCTGCCTGGCCTGCGCGAGAAACATCCTGGTGCAGACGCCCGACGCCGAATCCCCGCAGAGCAGCCGCGCGTCGGGCTCCGGCGTCTCCGATTATGATTACTTAGACCTGGATAAGATGAGTCTGTACAGCGAGGCGGACAGCGGATACGGCTCTTACGGCGGGTTCGTGAGCGCACCGACAACCCCGTGCCAGAAGTCCCCCAACGGGGTACGTGTTTTCCCCCCTACCGTGCCTCCTCCGCCACAGGCGCAACACCACCTGCTGCCTCACACCGGCGTCCTGCCGCCGGTCCCCCGGAACTCCTGCCTCACCTGCCCGCAGTGCCACCGCAGCCTGACACTGGACGACCGGGGGCTCCGGGGCTTCCCCAAGAACCGTGTCCTGGAGGGGGTTGTGGACCGGTATCAGCAGAGCAAAGCGGCCGCGCTCAAGTGTCAGCTGTGCGAGAAGAGCCCCCGCGAGGCGACAGTCATGTGCGAACAGTGCGACGTGTTCTACTGCGATCCGTGCCGCCTGCGGTGCCATCCGCCCCGGGGTCCGCTGGCCAAACACCGGCTCGTGCCTCCCGCGCAAGGCAGGATCAGCCGCCGCGCGAGCCCCCGGAAGATCTCCACCTGCACCGAGCATGAGCTGGAGAACCTGAGTATGTACTGCGTCCAGTGTAAGACCCCCGTGTGCTACCAGTGTCTGGAGGACGGCAAACACTCCACTCATGAGGTCAAAGCGCTGGGGGCCATGTGGAAGCTCCACAAGACCACAAATGAAAGTGGAGGTCTCTTGGCGGATGGTTGTCATAGCAATGGACAGCTCTCTCAAGCACTGAATGTTCTGTCTGATCGGGCCACAGAGGCCAAAGAGTTCCTGGTGCAGCTCAGAAATATGGTCCAACACATACAGGAGAATGGAGTTGAATTCGAGGCATGTTTGGTCGCCCAATGTGATGCTCTGATTGAAGCTCTCAACCGCAGGAAAGCTCAGCTTCTCAGCAGAGTAACCAAAGAACATGAACACAAACTCTCAGTGGTTCGTGATCAGATATCCCACTGCACGGTGAAGTTGAGGCAAACCACAGGACTAATGGAATACTGTCTGGAAGTTATCAAAGAAAATGATCCCAGTGGCTTTCTGCAGatCTCAGATGCTCTGATCAGACGGGTCCATATGACAGAGAATCAATGGGGGAAGGGCTCTCTGACCCCTCGCATGAGCAGTGACTTTGACCTGACGCTGGACAGTGGACCCCTGCTGCAGACCATACACCAGTTAGACTTCGTCCAGATGaaggTTCCAGCTGCTCCTATTCTTCAGTTAGAGGAGTGCTGTACTCAAACCAACAGTGCTACTCTGTCATGGAAACAGCCACCTCTCTCTACCATAGCTGTGGATGGCTACATTTTAGAACTGGATGATGGGAATGGAGGCCAGTTCCGAGAGGTGTATGTTGGCATAGAGATGATCTGCACAGTGGATGGTCTGCACTTCAACAGCACTTACAAATCACGTGTTAAAGCGTTTAACTCCAGTGGAGTCGGCCAGTACAGCAAAACGCTTGTCATGCAGACATCAGAGATGAGTCTGCCTTCATATGGTAGTAAAACTCTGGCAGCAGTTGCCTGGTTTACCTTTGACCCTGCGTCGGCCCACCCTGACATCATCTTGTCCAATGACAACCTCACGGTGACGTGTAACAGTTACGACGACCGCGTTGTGATGGGCAACACAGGCTTCTCTCGTGGCGTGCACTACTGGGAGATGACCATCGATCGCTATGACAACCACCCTGACCCTGCGTTTGGAGTCGCCCGCGCCGATGTCCTGAAGGACGTGATGCTGGGGAAGGACGATAAAGCCTGGGCCATGTATGTGGACAACAACCGCTCCTGGTTCATGCATAACAACTCACACACCAACCGTACGGATGGAGGAATAAGTAAAGGAGCGACTGTGGGTGTGCTGCTGGATTTCTCTCGTGGgattctgttgtttttgataAATGATGAGCAACAGGGACCAGTAGCCTTCAACACACTGGAGGGCATGTACTACCCGGCCATCAGCCTCAACCGCAACGTTCAGGTGACTCTTCATTCTGGGCTGCCTATTCCTGATTTTTATACACCCGGAGAATCTGAAGCTGCAGGCTCCGTCTGCTGAAGAGGCATTACATTACACTTCTatacatacgtacacacacgcacagagaaGTGCACGTGGATTCAGCTGTGAGTACTTGGCGGGGGAATTGCTGCTGACAgtcattaatacattttaacaagGTCTGAGTTCTGAAATGTAAACTGACCCGATATGTGCGAGGGTTAGGGTTAACTAAAcgctaacttaaccctaaccttaactctgACCCTGATGTATGTGAGGTAAATTGATATTGAAAATTCTTGAAtcattttcttctctctttcttacaCTTTTTctatatatgattattattattgatgttgtcattgtttttatGGAAAAGGTGCTCATGGATGTGAACTCCCAGATTACTGGATATTAACAGAtgtctgtctgttgtttcaTGATAAAATCCTCTGTGTGAAGTTAAGCTTAGACATAAGTTACTGATGTGTTAGACCTTAGAGgatgcattttacattacataGAAATGTTCTGTTGCATATAAAGGTGATTTTTAACTGCAGACGGGGACAGAAACTAGagtaaaatatctaatattacAACCTCCTCATGCATATTGCACCTTAGTTAATGTCATATCCTAAACCCTATCTTGAACTGACCCAAACCCGATATTTCCATTCTTCTGCATTCACAGTGGATGAGCAAACACACAGTTGGGACGTATTAGACAATGCCAGAATGAGCCGAATGTGTGTCAGTGAGGAGGTAATGGCTTTCTGTTTGTCGAAACAGAATAGAAAACACTAATTGGGGcaaaaacacgcacacatacacacacaggcattTTCACAGCCTTGCGTAACGTATTATGGAGAGATGAGaatgaataaagtttttgtttatctCTCTCTCCGTTTTATTTCTCCTTTGTTGCCTCAAATCCGCACAAGCTAACGCAAATGCTAAACAAATAACTGGTGCTGCTTATGTTCAATGTgagaaaatattgcaatattaaagAGTAGAGCTGCAAATCCAAAAGAGAGAACTTTAAACAAGACAGCATACATTGTAGCTGCTTGAAGCATTGGCTATTAGTTTACCATAAAGGATGTACTTttgcattaagaaaaatatttaaaatcccACTGGTGGGGTTGAAATATGGGGCGGGCAGGTGCTGTActttatctgtttgttgagcAGATGGTTTTTGCTCAACAAACAATTGAATGTTTGGGTGCAGTGAGTGCAAATTTCACCCattgtaaattgtattttttcataaattaatcccagtataagaaatgtattattattattactattgtgtCTGAATTGTTGTTATCTGTAAAGTTCTATGCTCAATAAACTGGATTAGGTGCAATATA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10649 TRIM9_67; tripartite motif-containing protein 9/67

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138967 lncRNA downstream 125326 14187539 ~ 14189904 (-) True G93905
TU138968 lncRNA downstream 125326 14187539 ~ 14189904 (-) False G93905
TU138970 lncRNA downstream 125326 14187539 ~ 14189904 (-) False G93905
TU138971 lncRNA downstream 125326 14187539 ~ 14189904 (-) False G93905
TU138913 lncRNA downstream 410528 13903754 ~ 13904702 (-) False LOC122356386
TU139118 lncRNA upstream 538627 14872432 ~ 14873014 (-) True G94003
TU139135 lncRNA upstream 647191 14980996 ~ 14995700 (-) True G94016
TU139147 lncRNA upstream 691907 15025712 ~ 15036994 (-) False lmbrd1
TU139165 lncRNA upstream 893709 15227514 ~ 15231255 (-) False col9a1b
TU139177 lncRNA upstream 910726 15244531 ~ 15248584 (-) False col9a1b
XM_043256419.1 mRNA downstream 362 14307030 ~ 14314868 (-) True pygl
XM_043256230.1 mRNA downstream 9692 14285769 ~ 14305538 (-) True nin
XM_043256135.1 mRNA downstream 29858 14277396 ~ 14285372 (-) True sav1
XM_043256279.1 mRNA downstream 47752 14243402 ~ 14267478 (-) False map4k5
XM_043255315.1 mRNA upstream 59854 14393659 ~ 14483039 (-) False syne2b
XM_043255313.1 mRNA upstream 59854 14393659 ~ 14483039 (-) False syne2b
XM_043255312.1 mRNA upstream 59854 14393659 ~ 14483039 (-) True syne2b
XM_043254700.1 mRNA upstream 156899 14490704 ~ 14524802 (-) True kcnh5b
XM_043255254.1 mRNA upstream 202840 14536645 ~ 14555851 (-) True ppp2r5eb
TU138948 other downstream 150882 14160323 ~ 14164348 (-) True srsf5a
TU138949 other downstream 150882 14160323 ~ 14164348 (-) False srsf5a
TU138950 other downstream 150882 14160323 ~ 14164348 (-) False srsf5a
TU138946 other downstream 232472 14079532 ~ 14082758 (-) True LOC122356235
TU138915 other downstream 403393 13910339 ~ 13911837 (-) True G93875
TU139176 other upstream 906945 15240750 ~ 15242797 (-) False col9a1b
TU139178 other upstream 916770 15250575 ~ 15253281 (-) False col9a1b
TU139278 other upstream 1230812 15564617 ~ 15583917 (-) True G94128
TU139299 other upstream 1308226 15642031 ~ 15642503 (-) True G94147
TU139376 other upstream 1418842 15752647 ~ 15755060 (-) True nkx2.3