RNA id: XM_043256419.1


Basic Information

Item Value
RNA id XM_043256419.1
length 2781
RNA type mRNA
GC content 0.48
exon number 20
gene id pygl
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14307030 ~ 14314868 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTCTCGTGAACCCCGGTGCTCGGTGTAACCGGTGATCTTCAGGATGGCGACTCCTCTAACGGACCAGGAGAAGCGCAAGCAGATCAGCATAAGAGGGATCGCCGGCGTGGAGAATGTGACAGAGCTGAAGAAAGGCTTCAACAGGCACCTGCACTTCACGCTGGTCAAAGACAGGAACGTCGCGACGCCGCGCGATTATTATTTCGCGCTCGCGCACACGGTGCGTGATCACCTGGTGGGCCGCTGGATCCGAACGCAGCAGTTCTACTACGAGGCCGACCCCAAGCGTGTATATTACCTGTCCCTGGAGTTCTACATGGGTAGAGCACTCCAGAACACCATGATTAATCTGGGTCTGCAGAACGCCTGTGATGAGGCTATCTACCAGcTCGGGTTGGACATGGAGGATCTGGAAGAGATGGAAGAAGATGCCGGATTAGGAAACGGAGGGCTGGGAAGATTAGCAgCTTGTTTTCTCGACTCTATGGCGACTCAGGGTCTGGCTGCTTATGGATATGGGATCCGATACGAGTATGGAATCTTCAACCAAAAAATTAAAGATGGCTGGCAGGTTGAGGAGGCGGATGATTGGCTGAGGTACGGTAACCCCTGGGAGAAAGCCCGTCCTGAGTTCATGCTGCCTGTGCATTTCTACGGCCGTGTGGAGGAAGAGGATGGGAAGGAGCCAAAATGGGTCGACACGCAGGTGGTCCTTGCCATGCCGTACGACACGCCAATCCCTGGATACATGAACAACACAGTGAACACAATGCGCTTGTGGTCTGCACGTGCACCCAATGACTTTAACCTGCGAGACTtTAATGTTGGTGATTATATTCAGGCAGTTTTGGACCGTAACTTAGCAGAAAACATTTCCCGTGTACTCTATCCAAATGACAATTTCTTTGAAGGGAGGGAGCTGCGGTTGAAGCAGGAATATTTTGTGGTGGCAGCGACTTTACAAGATGTGATTCGGCGCTTTAAGACCTCGAAGAGGAACTGCTCTGGACCGTTGTCATTTGATAGCTTCCCTGATAAGGTTGCCATTCAGCTGAATGATACTCACCCTGCTATGGCCATCCCTGAACTGATGAGGATATTTGTGGACATTGAACAACTAGACTGGGACACAGCTTGGAATATCACTAAACAAACCTTTGCATACACCAACCACACGGTTCTGCCTGAAGCTCTGGAGCGCTGGCCAGTCGAACTGATGGAGAAACTTTTACCCCGACATCTGCAGATCATATACAGGATCAACCAAATACATCTGGATCATATAGCATCTCTGTTTCCAGATGACATGGATCGCATCCGCAGGATGTCTCTGATCGAGGAGGAAGGGGGAAAGAGAGTAAACATGGCTCATCTCTGCATTGTGGGCTCACACAAAGTCAATGGAGTTGCAGAGATTCACTCCGACATCATCAAAAGAGACGTGTTCCGAGACTTCAGTGAGCTGGAACCAGAGAAGTTTCAGAATAAAACCAACGGCATCACACCACGACGCTGGCTGCTCCTCTGCAACCCAGGGCTGGCTGACCTGATCGCAGAGgcTATCGGTGAAGAATATGTGAAAGATCTGACTCAGCTGCAGAAGCTGAATGATCTGGTTGATGACGATGCTTTCATCCGAGATGTAGCCAAAGTCAAACAGgatAACAAGCTGAAGTTTGCGCACTATTTAGAGAAGGTGTACAAGGTGGACATAAATCCCGCATCCATGTTTGATGTCCATGTGAAAAGAATCCATGAATACAAACGGCAGCTGCTCAACTGCCTCCACGTCATCACCATGTACAACCGCATCAAAAGGAGCCCCATTAAACCGTTCGTACCACGGACTGTGATCATCGGTGGAAAGGCTGCGCCTGGATATCACATGGCAAAGATGATCATTAAGTTGATCACCTCCGTTGCTGACGTTGTGAATAACGATCCTGTGATTGGCCGTAAACTCAAGGTCATTTACCTGGAGAACTACAGAGTGTCACTTGCAGAGAAAGTGATTCCAGCTACAGACCTGTCAGAGCAGATCTCCACCGCAGGTACAGAAGCCTCCGGAACGGGAAACATGAAGTTCATGCTGAACGGGGCACTGACCATCGGCACTATGGATGGTGCCAACGTGGAGATGGCAGAAGAAGCCGGAGAAGAAAACCTCTTTATCTTTGGCATGAGAGTGGAAGATGTGGCTAAGATGGATACAGAAGGctatGATGCAATGCAGTATTACGAGAGTCTTCCGGAGCTGAAACAAGCCATAAATCAGATCAAAAGTGGTTATTTTTCACCGAAACAGCCTGAGATGTTCAGTGACATTATCAACATGCTTTTCCATCACGATCGGTTTAAAGTTTTCGCAGACTATGAGTCTTACGTCGAGTGTCAAGACAGAGTCAGCGCTCTGTATAAGGATCAGAGAGAGTGGACTCAGGTGGTGATAAAAAACATCGCAGCGTCTGGAAAGTTCTCTAGTGACCGTACCATTAAAGAATATGCCACTGAGATCTGGGGAGTGGAGCCCACCGACCTGAAGATTCCCCCACCCAGCGAACCCCGCGAAGCTCTGGAGGAAACCGCCCGTGCCCTGCGCAAGAACTGAACGCGTCAGCACAGAGTCATAGGATCATGAGAAGACTTGTTACAGTAATTAGAATTAATATACAATAACTACGTAACTTAGTAAGAATTCCTTTTTAGCTTTTGCTTCCTCTTTTTTCTAAAGGAGTGCCTTgtacaagcaaaaaaataaaataaaactaattttacttCAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0008184 glycogen phosphorylase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00688 PYG, glgP; glycogen phosphorylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138967 lncRNA downstream 117126 14187539 ~ 14189904 (-) True G93905
TU138968 lncRNA downstream 117126 14187539 ~ 14189904 (-) False G93905
TU138970 lncRNA downstream 117126 14187539 ~ 14189904 (-) False G93905
TU138971 lncRNA downstream 117126 14187539 ~ 14189904 (-) False G93905
TU138913 lncRNA downstream 402328 13903754 ~ 13904702 (-) False LOC122356386
TU139118 lncRNA upstream 557564 14872432 ~ 14873014 (-) True G94003
TU139135 lncRNA upstream 666128 14980996 ~ 14995700 (-) True G94016
TU139147 lncRNA upstream 710844 15025712 ~ 15036994 (-) False lmbrd1
TU139165 lncRNA upstream 912646 15227514 ~ 15231255 (-) False col9a1b
TU139177 lncRNA upstream 929663 15244531 ~ 15248584 (-) False col9a1b
XM_043256230.1 mRNA downstream 1492 14285769 ~ 14305538 (-) True nin
XM_043256135.1 mRNA downstream 21658 14277396 ~ 14285372 (-) True sav1
XM_043256280.1 mRNA downstream 39551 14243402 ~ 14267479 (-) False map4k5
XM_043256279.1 mRNA downstream 39552 14243402 ~ 14267478 (-) False map4k5
XM_043256278.1 mRNA downstream 39552 14243402 ~ 14267478 (-) True map4k5
XM_043256289.1 mRNA upstream 362 14315230 ~ 14333812 (-) False trim9
XM_043256292.1 mRNA upstream 362 14315230 ~ 14333806 (-) False trim9
XM_043256286.1 mRNA upstream 362 14315230 ~ 14333805 (-) True trim9
XM_043256293.1 mRNA upstream 362 14315230 ~ 14333796 (-) False trim9
XM_043256287.1 mRNA upstream 362 14315230 ~ 14333795 (-) False trim9
TU138948 other downstream 142682 14160323 ~ 14164348 (-) True srsf5a
TU138949 other downstream 142682 14160323 ~ 14164348 (-) False srsf5a
TU138950 other downstream 142682 14160323 ~ 14164348 (-) False srsf5a
TU138946 other downstream 224272 14079532 ~ 14082758 (-) True LOC122356235
TU138915 other downstream 395193 13910339 ~ 13911837 (-) True G93875
TU139176 other upstream 925882 15240750 ~ 15242797 (-) False col9a1b
TU139178 other upstream 935707 15250575 ~ 15253281 (-) False col9a1b
TU139278 other upstream 1249749 15564617 ~ 15583917 (-) True G94128
TU139299 other upstream 1327163 15642031 ~ 15642503 (-) True G94147
TU139376 other upstream 1437779 15752647 ~ 15755060 (-) True nkx2.3

Expression Profile