RNA id: XM_043256230.1


Basic Information

Item Value
RNA id XM_043256230.1
length 7696
RNA type mRNA
GC content 0.47
exon number 27
gene id nin
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14285769 ~ 14305538 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCAAAATCTCCCTGACCGCCCCATTATAATAGACAATGTAGCACACTGACCCGAGCGCTCAGCAGAAAGACAGCACGTTCTCCGCTTTATCTCCGGCGTCAGATCCAAACACACACGAAACGGTTCAGTTTGAGGGCGAGCTTCGGATCAAACCAATGGACGTATAGTAGAATAACGGAGACACGGCGCGCGTCTGTGAAAACCGCCCGgAAAGGCTGATGGATGGAGCGAGGGACCAGTATGAGGAACGATTGAAAGAGGTGTTTGAGAGTTTTGACGGCAGTGGTTTGGGCTCCCTGAGTCCTGAAGAGCTCACCGATCTCTGCCGGGCCCTTCAGCTGGAGGAAAACACACTGAACACGCTCTTGCACACACTGCTAGAGGACCAGATCCGTGCACGGGTTGATTTTGAACAGTTTAAGGATGCGCTGATCCTTGTGTTATCAAGCGCAAACACAAATGATACAGAAGAATGTCTTGAAAGACCAGATTCCCCAGAAGTCCAGCCACGTTTTGTGAAGGGCAGTAAGCGCTATGGCCGTCGCTCTGCTCCGGAGTTCATTCAGACGCACACTGATTTACACACACGCGCTGAAGATGAGGAGGCGAAGGATGAAGATGCTCAAGAGAGCGATGACAGGACTGTACCCAGGAAACGTGAGcgCTGGAATGCTGACCTCAGCATTTCTGAAGAGTTTGAAGCAGAAGGTCAGCTGCACCTCTGGAACCCAGATGAACCCAGCACACCACGTGGCAATGCACTGCCACTCTGTGACCTGGAGGAGCGTATCCATAACGCTTGCCATCAGCTCTCTCTGCCTATAAACGGCACGGCCACATTGCAACAGCTACACACTCTCTGCCAACACATAGGCATTGAGGTGGGTGAGGATCTGTTGCAGTGTGGTGATGAAAGCGCAATAGATGTGCAGGAGTTCATCTCATGCATAATAACCCATAGCAAACCCCCCACCCCATCAGCATCTACACCCTACAGACATTTAAAGAGACTCCATTCCACTCAGTTTGATGAGTCGGGTCGAAGGATCTCATGTGCTTTGAGCAGTACAATCGGTCTGCAGGTGTTTTCGGATTTGGATGACGGATCGGGGCATGCTCCAGTGGAAACTCTGCTTTACAGGTGGATGGAAGAGGGAGTGGACAATAGCTCAGAGATCTTACAGgCTCTGGATTTTAATCTGGAAGGTAAAGTGAATCTATCTGAGCTGACCGTTGCTCTCGAGAATGAGCTTCTGAGCACTAAGAACTCAATCCACCAGGCGGCGCTAGTGAGCTTTAAGGCAGAAATCAGACATCTGCTTGAATGTGTTGACGTGGAAAGGCGTGAGAAGGAGAGGATTCGTTTTGATCTGGACAAAGCAGAGAAGCTGAAATCTCAGCTGGCATCTGAAGTCGATGACCATCATGCTGCCATTGAGCGCAATAACGAACTCAACCTCCGGAAGTTGGAGCAGGAATATAAAGAGAGTATGACAGCTCTGAGAGCAGAGCTTAGTAAAGAGGTGGAGCTTGTGCAGCAGCAGGCCAATCAGCAACGAGAAGAGCTTGAACAGGAAATTGGCAAGATGAGAGACGATGAAACCTTTCTACGAGAACATCTATCTCTCACCATTAAAGAGAATGGGCGTCTGGAGTCTGAACTTGTTGACACCACAGAGAAACTGGTGGAGGCAGAAAACCAACTGGACAAAGTGCAAAAAAACCTGGATGGTGTTTTAAAAGAGAAGTTTGGTGATTTGGATCCAGACAGTGCTGAGTTTTACCAGCAGGAGGAGCGTCTGAGACAGCTGCGCAAGAACTATGAGGAGCAGTGCAGGGAGTTGCAGGATCGTATAGATGAGCTGGAAGCTCAGCTGGAGGAATATCAGACTTCAGGTCACACACCCTCAACACGTCCCGGACTGAGTCTGTCTGATGAACTGGCCAGCAAGAGTCTAGACCCAGgTTCTCAGGATAAGCAGCCATTAAATATGAGTCTAGAAACTGAGATGTTACTGGAGCAGCACCAGCGAGAGATAGAAAACATCAGGGCAATGGTTCATGAAGAAAAACGCAGTGCAGAGGAGGAGAAGAGTCATCTCTCACTGCAGCACCAACAGGAGGTGCAGGTTTTGAGGGAGGAGCTGGCaacagagcaagagagagcAAACCGTTTGGAGCTGGAAATTACTACCCTCAAAACTCTCCACCAGCAAGAGCTTAACACTCTCATGCTGGAGGCGCAAGATGCCAGAAGCCGTGCTGAACAGCTGGAAGCAAAGGTGCAAATTCTGGAGGAAAAACAGACTGCCTATGAGGAGCAGATCAGAGTGCATGATGAGGAGATAAGTCTGATCAAATCTAAGCACCAGGAGGTGCTGGAGGCCAATCTGCAGGAGCAGAAAGAAAGACTGCAAAAGGAGAAGGAAAAGGAGGAGAAGAGACTTAAGAAACAATGGAAAGAAGAGCAAAAGAGCTATGAGGAGGTGCTGTGTTCTCAGCTTGAGGAGATGCAGCATAGAACAGAACAGGAGTGTGTTGAGCTGGAAAAGAGGCTCAGGGAGCAGTGGGAGAGGGAGAGGCAGGATTTAGAGGAGAACAGTAAGGAGGTACTGCAAGCTGtgctggaggagagagagaggaggctCAAGGAGCAATGGGATCGTGAGAGGCAGGAGCTTGAGGAGATCAGTAAGGAGACGCTGCAGGCTGTGCTGGAGGAGAGACTGGAGAGGGAGAGGAGACTCAGGCAACAGTGGGATGAGGAGCGTGCTTCGTTAGAGAACAAACATCACGCTCTGCTCCTGCAGCGTTTGCAGGAGGAGAGGGAACACCTCCGCTCACAGCAGGAGGAGACCGAGAGTATTATAATAGAGCACTGGGGCAGAGAGAGGGCTCAGCTGGAGAAACAACATGAGGAGGCGCTTCAGGCCTGTTTGGaccaagagagagagagactgcaaggagagagagaggagcaggaGAGGAGGTGGCAGCAGGTGTTGAATGAAGAGCAGAGCCGGATGGAGGAGGTACACAGGGACGCCATGCAGGAGCTGAGTGCCAAACACAATGAGGAGAGAGAAAGGCTCAGCAGCCTTTTGGAGAAGCTACGTTCCGATATTGCAGAGCAGAGGAGAGAGCTGGAGAAACAATTCTCCCAGAGACTTGAAGAAGTGGAAGTCCGTTTCTATGGTGACCAAGAGGCAGTGTCTGAGCGTTTTCAGGTGGATGTACATAAACTTGAGCAACATTACCAAAGTGAGATTACAGCAATTGCCCAACAGCACGCTGCAGATCGTGCCCACTGGGAGGAGGAGTCAGAGGCAGCCACCAAGGAGGCAGAGCAACAGAGAAAGCTTTTGAGGGAGGCACTGGACCTAGAGAGGGAGGAGCTCCAAAAGGAGCATCAAAGCTTCGAAGTTGTACACGCACAAGATATTAAAGCTCTTACAGACAAGAACCTACAGCTTCAGGCTGAGCTGGAGGCCTTTGCCAGTGCTGCTCGAACCAAAGAAATTGAGCTGAGTCGCCAACTCAATGAGCTGCACAACCATGTGCAGGATAGGATGGAGGCCAAAGACCTGCTGCTGGCACAAGCAGAGCACAAAGCCACTGAGCTGGAAGAGATGCTGAAGCAGGCTGTGGATGACTTCATCCAGGAGCGAGCAGAGCTGCAAAAAAGTCTGTCTGCTTTGGAAAGCAGGCGAGAGGAAGTCATTTCAATTTCTGAGGATATGGAGCTGTTAGGCAGAATCCAGAAAGGTGAGGAGCTCCTCTGTCAGGAATTAAAAGACGAGAGAAAGGCACTGCTTGCAGAGAGAGATGCACTGGCATTGAGAGTGGTGCAGTTGGAGGAAATTGTGTTGCAGTTGACAGGAACCACTGGAAAACCTTCTCAGGAACCTTGTGTAGAGTCCACCATAGAAATCCCTATGGAACCCAGTGGCGATGACCTTGAAGAAACTTGTGAAGAATCCACAATTGTGTCCTTTGATGAACTCAATGAAGAAACTGGCACAGAATCTACTGAGGAAGTCAGTCCAAAGCACGTCATATGTGAGGAGTCTTCTGTAAACAGAAAAGATGAAGAGGAAGCGGATAAAGTTAATGACCCAGACTCTGATATTTCACAACTACATAGATGCCCAGAGGTTGATGTTACAGATGACATAACTTCAAACTCTTGTGCAGATGATAAATTAGACGTGGCTGATGTAGAATCTAACAACAATGCAATAGAAACCCCTGATTGTCCTAAAGAAGAGAAGGAAGATGCTAAGGAGAAACTCTGTATACCTGGAGTGGATGGTTCTGAAGATACAGAACTGACTGAAGAACTGAATGTTAAGAGCAATAGCACAGAGACTCCGAGAGATGACACTTTGAATATTGCAGAGGAGTATTATTTGAATGGCACAGAAAGAGAAGGCAATTTATCTGCAGAATCTGATGATTCCTATAACCAGGAGAGCTTGCAACACCATGAATCCCCAAGCAAAGACGACACCCAGGCTGAATACAATGACAAACCAGTTGACCCCGAGACTGAAGAAAGTCCAGAGGATGGTATCAGCATTGCAAGCCTTGAGAATGACATGAGGGCCTATGTAAAGGAGGTTTGTACCCTAACTATAGTGGATACAGAGCAGGACAAAGTTGCTGATCTGAGAGATGTGTGCATGCAGGAGATCCTGGACCTTCAAGAAACGGTAATGCAGTACAGCAAAGCTATAGAATGCACTAGCTCTCAGTTGCAGAGTCCTAAACGGCTGGATCCAGAGAAAGAGAATATCACACCCCAGTCGGCAGTcccaaatgaaaatgtacaacTTGCTGATTTAAAAGCCTGCTTTGAGCAAAGCATCCAAGAGAACTTGCAGCTCGTAGACTGCAACAGAAAACTCGAGAGTAGAGTCAATAATCTTGAGGACAAGATGCATATAGTCCATGAGCTCCACAAACAGCTAGCGTCGGTGCTGGAAGAGACTGCACGAGTCCGAATGGAGAATTCCAAACTAAAGGCTCTTGTCCAGGAACTTGATAAGCAGGATAAGGGGCTCCAATGGGACTCTGACTCTTCCGATACTTCACACAACTCCCAGCTGAAAGAGAAGATTGCTGCGGTGACAGAGCTTGAATTCTTCTGCATGGAGTTTGAGAAACAGAACTCGCATCTACGCAGAGCACTTGCTGATCTTCAGGGCAAGTCTGTTAGGATCCATGAGCAAATGCAAGAGAGGAGAACTGAAGTTTGTCGTCTGGCTAAAGAGAACATCATTCTGAGGCACAAGATCTCAACAGTAAGGGAGGAGGATTTGAGAGAGAACCAGGATGACCTGCAATTACATCACATCAAGCAAGGGAAGAGATCGGTACAAGCTCTCAGGAGACAACTCTCTGAGCCTCGCCGTCTAGGACAGCAGCTAGAGGAGGAGAATTTCTTATCGCAGCAGAATGCAGATCATGTACTTCGACATGCACTCCAGGAAGTGATACGTCAACATGACAGCTCAGCCAGTGACAAGAATGGGTTGTCTGACCGCGAGGATTTTGGTTCCAGAACAGAAAAGGAATTGCTTAGATCAGAACTCAATCGGTGCATAGAAAAGGTCATGTCCATGGATTCATCTTTACAGACGGTCACTCAGCAGAATGCTCGTCTAAAATCTGACCTACGCATCACACAGCAAGAAAGAGATGCCcttaaacaggaagtgattTCGTTGCACAAACAATTGCAAGCTGCCAATGAGAAGTTGTTGGAGGTTTCTGTTGTGTCTGCTAGTCAGCAACAAGGAAGGCGAGTGTGGGCGGAGCTTTCTGGGCTGATGGAGGCGGAGCATGCCTCACTTACAGAGGAGAACCAGCAACTCAAGCGTCAGATAAGCGAGATGAGCTCAGAGGTGCAGTCCTTAAAGGAGCAGatccgCCATCTGGAGGCATTAAGTGTAAAACACAGAGGACTTGTAAAAACTGCAGATCAAGAAAAATCAGTCTTGAAACGTGAaatggaggctttgcacgctcAGCTGCTGTCAACACGGAACAAGGCTCAGATGGCTGCAGTCTTGCCTTCATCTCCTCTACAGTTGCCAGGGGAACAGAGAGGACAGCACCATAGCGACGGTCCAGACTTCATCATGCAGGACGAGCGGGAGGTGGCACTGTTACAGATGGAGGAGAGAATGGGAGAAGTGGAGCTCACGCTCAGAAACCTCAAACTGCTTCTACAGGAGAAAGTGTCTCAGCTGAAAGAACAGTTGATCAGGAACAGTGAATCGGATGTGTTGATCAAAGACCTATACGTGGAGAATGCTCAACTGCTCAAAGCCCTGGAGAAGACAGAACAGCGTCAGAAAGTAGCAGAAAAGAAGAACTTCCTCCTAGAGGAGAAGATTTCCAGCCTCAATAAGATTGTCCGTGACCTTGGCCCTTCCCCACTGACTCCAGCGCCCTACCACTTCACGCGCTCCtgatttttaaactgtattagACGTGTTTAATCGTAAAAGCCATTCCAGTATGATTTTCTACTGAGAAACATGTTCGAGCTGCTCTTTATACATCAAGCTGCAAAAAAGGACAGGAAACGCAAGTAGTCTTGTGCAAGGCTTGTGCACTATACGTATGCTCTGAAGCCATACGAAAGCTTTGTGTAGTgaacaaactgaaattaaattattggcTGAAGATCTTCCCGTCTGCCGTGGATCCCAAATCTCCttcccattcatttttattactagGTGAAACTTTCCAttaagttattgtttttattgcttttatcaaTTTAAGTGtatagcgtttttttttttgtttgtttaagccATACTGCAATGAGTCTGTACCTCAAACTGCATCTAGAAGGAGGTCTTAAGGAATGGTGAAATTCCTTATACCTAGAGAAGCTTGTCCAACAGCTGAGGCCccgtgttcacacacacacacacacacacacatgcacgcagcCGCCTATCATTACATAGTTGTAGTGAAATGCAAACAAGGTCAATGATTCCCTGCATTTCAGAGAAGGAAATTAAAGGGCAAATGCCACAGTGTTTCTTCACTGTTTATTTCTGCTTGTTATAGTGCATTTTATGTCTTTGGGATTGTTTAGTTAATATAAACCTTTTCACTTGAGAATGTGCACCGAAAACATCCCATACTTTTACTTTAGTTGCCGCAGGACTTTgtgctttgtatttattttgtgtacctatttttcatttatgaacTGTAATCATGTATTATGAGCACTGTGAATATGAATAATAGggagtttaataaaatatttatgtggagTAAAAGAAACTCGGAGCTCGGAGATGTCAGCCTCGTGGTAACCACTGTATAATTTGTGTGTGGAGAGCAAAATTGTTGGTTATGATGTTTCATTTCAGGCATCTCTCAACGAGTGCAGTTTACAAGCTTTGATGCTTTGGGAAAAAATGCACAGAGAATTACaggcatttaaacattttgaaattgcaTTGAAATATGTGTCCTTATGTTTTTAGAATTGTAACACAGCCTTAGGTGAAGTATGATATATGCTTTACCAATACTTGTTATAAAAATAACGTTAACTGTACCCTTTAAGTGTTAATTGTGTAACACTTCGTTCAgatgcaaaaacacataaacattcttttttttgtaaaaaaataaaaaaaaaagtagtttagaAAA

Function

GO:

id name namespace
GO:0001841 neural tube formation biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16476 NIN; ninein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138967 lncRNA downstream 95865 14187539 ~ 14189904 (-) True G93905
TU138968 lncRNA downstream 95865 14187539 ~ 14189904 (-) False G93905
TU138970 lncRNA downstream 95865 14187539 ~ 14189904 (-) False G93905
TU138971 lncRNA downstream 95865 14187539 ~ 14189904 (-) False G93905
TU138913 lncRNA downstream 381067 13903754 ~ 13904702 (-) False LOC122356386
TU139118 lncRNA upstream 566894 14872432 ~ 14873014 (-) True G94003
TU139135 lncRNA upstream 675458 14980996 ~ 14995700 (-) True G94016
TU139147 lncRNA upstream 720174 15025712 ~ 15036994 (-) False lmbrd1
TU139165 lncRNA upstream 921976 15227514 ~ 15231255 (-) False col9a1b
TU139177 lncRNA upstream 938993 15244531 ~ 15248584 (-) False col9a1b
XM_043256135.1 mRNA downstream 397 14277396 ~ 14285372 (-) True sav1
XM_043256280.1 mRNA downstream 18290 14243402 ~ 14267479 (-) False map4k5
XM_043256279.1 mRNA downstream 18291 14243402 ~ 14267478 (-) False map4k5
XM_043256278.1 mRNA downstream 18291 14243402 ~ 14267478 (-) True map4k5
XM_043256284.1 mRNA downstream 42499 14236100 ~ 14243270 (-) False cdkl1
XM_043256419.1 mRNA upstream 1492 14307030 ~ 14314868 (-) True pygl
XM_043256289.1 mRNA upstream 9692 14315230 ~ 14333812 (-) False trim9
XM_043256292.1 mRNA upstream 9692 14315230 ~ 14333806 (-) False trim9
XM_043256286.1 mRNA upstream 9692 14315230 ~ 14333805 (-) True trim9
XM_043256293.1 mRNA upstream 9692 14315230 ~ 14333796 (-) False trim9
TU138948 other downstream 121421 14160323 ~ 14164348 (-) True srsf5a
TU138949 other downstream 121421 14160323 ~ 14164348 (-) False srsf5a
TU138950 other downstream 121421 14160323 ~ 14164348 (-) False srsf5a
TU138946 other downstream 203011 14079532 ~ 14082758 (-) True LOC122356235
TU138915 other downstream 373932 13910339 ~ 13911837 (-) True G93875
TU139176 other upstream 935212 15240750 ~ 15242797 (-) False col9a1b
TU139178 other upstream 945037 15250575 ~ 15253281 (-) False col9a1b
TU139278 other upstream 1259079 15564617 ~ 15583917 (-) True G94128
TU139299 other upstream 1336493 15642031 ~ 15642503 (-) True G94147
TU139376 other upstream 1447109 15752647 ~ 15755060 (-) True nkx2.3

Expression Profile